Pseudomonas putida S16, PPS_0318

Gene Ontology

Ontology	Accession	Term	GO Evidence	Evidence Ontology (ECO) Code	Reference	Comments
Molecular Function	GO:0008115	sarcosine oxidase activity	ISM Inferred from Sequence Model Term mapped from: InterPro:TIGR01372	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Biological Process	GO:0046653	tetrahydrofolate metabolic process	ISM Inferred from Sequence Model Term mapped from: InterPro:TIGR01372	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Molecular Function	GO:0005515	protein binding	ISM Inferred from Sequence Model Term mapped from: InterPro:G3DSA:3.30.1360.120	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Molecular Function	GO:0016491	oxidoreductase activity	ISM Inferred from Sequence Model Term mapped from: InterPro:PF07992	ECO:0000259 match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database	Xref	Pathway	Version	Evidence	PMID
MetaCyc		glycine betaine degradation I	InterPro 5.36-75.0	ECO:0000259 match to InterPro signature evidence used in automatic assertion
KEGG	ppt00260	Glycine, serine and threonine metabolism	81.0+/01-23, Jan 17	ECO:0000249 sequence similarity evidence used in automatic assertion
KEGG	ppt01100	Metabolic pathways	81.0+/01-23, Jan 17	ECO:0000249 sequence similarity evidence used in automatic assertion
MetaCyc		creatinine degradation II	InterPro 5.36-75.0	ECO:0000259 match to InterPro signature evidence used in automatic assertion

Functional Predictions from Interpro

Analysis	Accession	Description	Interpro Accession	Interpro Description	Amino Acid Start	Amino Acid Stop	E-value
SUPERFAMILY	SSF103025	Folate-binding domain	-	-	614	896	8.95E-92
PRINTS	PR00368	FAD-dependent pyridine nucleotide reductase signature	-	-	173	192	9.0E-12
PRINTS	PR00469	Pyridine nucleotide disulphide reductase class-II signature	-	-	460	478	1.3E-13
PRINTS	PR00469	Pyridine nucleotide disulphide reductase class-II signature	-	-	172	194	1.3E-13
Gene3D	G3DSA:3.10.20.440	-	IPR042204	2Fe-2S iron-sulfur cluster binding domain, N-terminal	10	104	5.7E-21
PRINTS	PR00368	FAD-dependent pyridine nucleotide reductase signature	-	-	450	472	9.0E-12
Gene3D	G3DSA:1.10.10.1100	-	IPR041854	BFD-like [2Fe-2S]-binding domain superfamily	522	586	3.7E-5
Gene3D	G3DSA:3.50.50.60	-	IPR036188	FAD/NAD(P)-binding domain superfamily	295	423	3.4E-24
PANTHER	PTHR43757	AMINOMETHYLTRANSFERASE	IPR028896	Aminomethyltransferase-like	607	996	4.7E-58
Pfam	PF07992	Pyridine nucleotide-disulphide oxidoreductase	IPR023753	FAD/NAD(P)-binding domain	172	486	1.2E-13
Gene3D	G3DSA:3.30.1360.120	Probable tRNA modification gtpase trme; domain 1	IPR027266	GTP-binding protein TrmE/Aminomethyltransferase GcvT, domain 1	615	1005	5.2E-126
Pfam	PF13510	2Fe-2S iron-sulfur cluster binding domain	-	-	17	102	1.5E-21
Pfam	PF01571	Aminomethyltransferase folate-binding domain	IPR006222	Aminomethyltransferase, folate-binding domain	620	885	9.6E-74
NCBIfam	TIGR01372	JCVI: sarcosine oxidase subunit alpha family protein	IPR006277	Sarcosine oxidase, alpha subunit	2	1005	0.0
SUPERFAMILY	SSF101790	Aminomethyltransferase beta-barrel domain	IPR029043	Glycine cleavage T-protein/YgfZ, C-terminal	907	1003	4.09E-16
Pfam	PF17806	Sarcosine oxidase A3 domain	IPR041117	SoxA, A3 domain	522	605	5.4E-31
SUPERFAMILY	SSF51905	FAD/NAD(P)-binding domain	IPR036188	FAD/NAD(P)-binding domain superfamily	167	473	6.47E-36
Gene3D	G3DSA:3.50.50.60	-	IPR036188	FAD/NAD(P)-binding domain superfamily	172	483	3.4E-24
Pfam	PF08669	Glycine cleavage T-protein C-terminal barrel domain	IPR013977	Glycine cleavage T-protein, C-terminal barrel domain	911	997	2.5E-17
PRINTS	PR00368	FAD-dependent pyridine nucleotide reductase signature	-	-	283	301	9.0E-12
PRINTS	PR00469	Pyridine nucleotide disulphide reductase class-II signature	-	-	284	292	1.3E-13
PIRSF	PIRSF037980	Sarcos_oxid_alpha	IPR006277	Sarcosine oxidase, alpha subunit	1	1005	0.0
PRINTS	PR00469	Pyridine nucleotide disulphide reductase class-II signature	-	-	373	389	1.3E-13

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.