Pseudomonas putida S16, PPS_1306
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Ontology
| Ontology | Accession | Term | GO Evidence | Evidence Ontology (ECO) Code | Reference | Comments |
|---|---|---|---|---|---|---|
| Biological Process | GO:0006535 | cysteine biosynthetic process from serine |
Inferred from Sequence Model
Term mapped from: InterPro:TIGR01136
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
||
| Molecular Function | GO:0004124 | cysteine synthase activity |
Inferred from Sequence Model
Term mapped from: InterPro:TIGR01136
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
Functional Classifications Manually Assigned by PseudoCAP
|
|
Pathways
| Database | Xref | Pathway | Version | Evidence | PMID |
|---|---|---|---|---|---|
| KEGG | ppt01110 | Biosynthesis of secondary metabolites | 81.0+/01-23, Jan 17 |
ECO:0000249
sequence similarity evidence used in automatic assertion |
|
| KEGG | ppt01100 | Metabolic pathways | 81.0+/01-23, Jan 17 |
ECO:0000249
sequence similarity evidence used in automatic assertion |
|
| KEGG | ppt00270 | Cysteine and methionine metabolism | 81.0+/01-23, Jan 17 |
ECO:0000249
sequence similarity evidence used in automatic assertion |
|
| KEGG | ppt01130 | Biosynthesis of antibiotics | 81.0+/01-23, Jan 17 |
ECO:0000249
sequence similarity evidence used in automatic assertion |
|
| KEGG | ppt00920 | Sulfur metabolism | 81.0+/01-23, Jan 17 |
ECO:0000249
sequence similarity evidence used in automatic assertion |
|
| MetaCyc | seleno-amino acid biosynthesis (plants) | InterPro 5.36-75.0 |
ECO:0000259
match to InterPro signature evidence used in automatic assertion |
||
| KEGG | ppt01200 | Carbon metabolism | 81.0+/01-23, Jan 17 |
ECO:0000249
sequence similarity evidence used in automatic assertion |
|
| KEGG | ppt01230 | Biosynthesis of amino acids | 81.0+/01-23, Jan 17 |
ECO:0000249
sequence similarity evidence used in automatic assertion |
|
| KEGG | ppt01120 | Microbial metabolism in diverse environments | 81.0+/01-23, Jan 17 |
ECO:0000249
sequence similarity evidence used in automatic assertion |
Functional Predictions from Interpro
| Analysis | Accession | Description | Interpro Accession | Interpro Description | Amino Acid Start | Amino Acid Stop | E-value |
|---|---|---|---|---|---|---|---|
| FunFam | G3DSA:3.40.50.1100:FF:000029 | Cysteine synthase | - | - | 155 | 297 | 1.7E-72 |
| Gene3D | G3DSA:3.40.50.1100 | - | IPR036052 | Tryptophan synthase beta chain-like, PALP domain superfamily | 12 | 297 | 5.1E-112 |
| NCBIfam | TIGR01138 | JCVI: cysteine synthase B | IPR005858 | Cysteine synthase CysM | 11 | 300 | 0.0 |
| CDD | cd01561 | CBS_like | - | - | 17 | 296 | 0.0 |
| Pfam | PF00291 | Pyridoxal-phosphate dependent enzyme | IPR001926 | Tryptophan synthase beta chain-like, PALP domain | 13 | 289 | 1.0E-67 |
| Coils | Coil | Coil | - | - | 120 | 140 | - |
| NCBIfam | TIGR01136 | JCVI: cysteine synthase | IPR005856 | Cysteine synthase | 13 | 300 | 1.1E-123 |
| FunFam | G3DSA:3.40.50.1100:FF:000003 | Cystathionine beta-synthase | - | - | 46 | 154 | 1.1E-43 |
| SUPERFAMILY | SSF53686 | Tryptophan synthase beta subunit-like PLP-dependent enzymes | IPR036052 | Tryptophan synthase beta chain-like, PALP domain superfamily | 9 | 300 | 1.7E-91 |
| PANTHER | PTHR10314 | CYSTATHIONINE BETA-SYNTHASE | - | - | 12 | 301 | 2.9E-94 |
| Gene3D | G3DSA:3.40.50.1100 | - | IPR036052 | Tryptophan synthase beta chain-like, PALP domain superfamily | 43 | 161 | 5.1E-112 |
Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.