Pseudomonas putida S16, PPS_3818

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0000166 nucleotide binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PR00980
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0043039 tRNA aminoacylation
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF07973
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Cellular Component GO:0005737 cytoplasm
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PR00980
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003676 nucleic acid binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF02272
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0004812 aminoacyl-tRNA ligase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF07973
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006419 alanyl-tRNA aminoacylation
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF01411
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0005524 ATP binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF01411
ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0004813 alanine-tRNA ligase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF01411
ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database Xref Pathway Version Evidence PMID
KEGG ppt00970 Aminoacyl-tRNA biosynthesis 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
SUPERFAMILY SSF55186 ThrRS/AlaRS common domain IPR018163 Threonyl/alanyl tRNA synthetase, class II-like, putative editing domain superfamily 554 711 1.7E-48
FunFam G3DSA:3.30.980.10:FF:000004 Alanine--tRNA ligase, cytoplasmic - - 555 714 4.0E-39
Gene3D G3DSA:3.30.54.20 - - - 626 680 5.0E-55
PANTHER PTHR11777 ALANYL-TRNA SYNTHETASE - - 4 874 0.0
SUPERFAMILY SSF55681 Class II aaRS and biotin synthetases IPR045864 Class II Aminoacyl-tRNA synthetase/Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL) 5 257 2.98E-106
Gene3D G3DSA:6.10.250.550 - - - 703 765 1.6E-6
Pfam PF07973 Threonyl and Alanyl tRNA synthetase second additional domain IPR012947 Threonyl/alanyl tRNA synthetase, SAD 655 699 2.3E-15
Gene3D G3DSA:2.40.30.130 - - - 451 554 3.9E-17
PRINTS PR00980 Alanyl-tRNA synthetase signature IPR002318 Alanine-tRNA ligase, class IIc 238 251 1.1E-30
PRINTS PR00980 Alanyl-tRNA synthetase signature IPR002318 Alanine-tRNA ligase, class IIc 78 89 1.1E-30
FunFam G3DSA:3.10.310.40:FF:000001 Alanine--tRNA ligase - - 767 873 1.8E-28
FunFam G3DSA:3.30.54.20:FF:000001 Alanine--tRNA ligase - - 626 680 1.2E-25
PRINTS PR00980 Alanyl-tRNA synthetase signature IPR002318 Alanine-tRNA ligase, class IIc 284 300 1.1E-30
FunFam G3DSA:2.40.30.130:FF:000001 Alanine--tRNA ligase - - 454 554 6.5E-33
Hamap MF_00036_B Alanine--tRNA ligase [alaS]. IPR023033 Alanine-tRNA ligase, eukaryota/bacteria 1 878 202.843903
Gene3D G3DSA:3.10.310.40 - - - 767 873 4.1E-32
SUPERFAMILY SSF101353 Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) IPR018162 Alanine-tRNA ligase, class IIc, anti-codon-binding domain superfamily 258 467 6.67E-62
NCBIfam TIGR00344 JCVI: alanine--tRNA ligase IPR002318 Alanine-tRNA ligase, class IIc 9 857 0.0
FunFam G3DSA:3.30.930.10:FF:000004 Alanine--tRNA ligase - - 4 254 4.9E-127
Pfam PF02272 DHHA1 domain IPR003156 DHHA1 domain 737 870 2.5E-25
Coils Coil Coil - - 370 390 -
Gene3D G3DSA:3.30.980.10 - - - 565 701 5.0E-55
CDD cd00673 AlaRS_core - - 7 253 0.0
PRINTS PR00980 Alanyl-tRNA synthetase signature IPR002318 Alanine-tRNA ligase, class IIc 211 222 1.1E-30
SUPERFAMILY SSF50447 Translation proteins IPR009000 Translation protein, beta-barrel domain superfamily 457 554 7.06E-20
Gene3D G3DSA:3.30.930.10 Bira Bifunctional Protein; Domain 2 IPR045864 Class II Aminoacyl-tRNA synthetase/Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL) 5 254 4.4E-122
SMART SM00863 tRNA_SAD_4 IPR012947 Threonyl/alanyl tRNA synthetase, SAD 655 699 1.1E-18
Coils Coil Coil - - 710 762 -
PRINTS PR00980 Alanyl-tRNA synthetase signature IPR002318 Alanine-tRNA ligase, class IIc 308 321 1.1E-30
Pfam PF01411 tRNA synthetases class II (A) IPR018164 Alanyl-tRNA synthetase, class IIc, N-terminal 9 557 0.0

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.