Pseudomonas putida S16, PPS_4008

Gene Ontology

Ontology	Accession	Term	GO Evidence	Evidence Ontology (ECO) Code	Reference	Comments
Molecular Function	GO:0003676	nucleic acid binding	ISM Inferred from Sequence Model Term mapped from: InterPro:cd04458	ECO:0000259 match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis	Accession	Description	Interpro Accession	Interpro Description	Amino Acid Start	Amino Acid Stop	E-value
Pfam	PF00313	'Cold-shock' DNA-binding domain	IPR002059	Cold-shock protein, DNA-binding	131	193	7.0E-25
SMART	SM00357	csp_8	IPR011129	Cold shock domain	131	194	6.2E-23
SUPERFAMILY	SSF50249	Nucleic acid-binding proteins	IPR012340	Nucleic acid-binding, OB-fold	129	193	2.36E-21
Gene3D	G3DSA:2.40.50.140	-	IPR012340	Nucleic acid-binding, OB-fold	110	197	9.7E-25
PANTHER	PTHR11544	COLD SHOCK DOMAIN CONTAINING PROTEINS	-	-	130	192	7.4E-18
PRINTS	PR00050	Cold shock protein signature	IPR002059	Cold-shock protein, DNA-binding	167	185	8.9E-15
PRINTS	PR00050	Cold shock protein signature	IPR002059	Cold-shock protein, DNA-binding	132	147	8.9E-15
NCBIfam	NF041604	NCBIFAM: cold shock protein N-terminal extension domain	IPR048090	Cold shock protein-like, N-terminal extension domain	1	106	2.8E-40
PRINTS	PR00050	Cold shock protein signature	IPR002059	Cold-shock protein, DNA-binding	152	161	8.9E-15
CDD	cd04458	CSP_CDS	IPR002059	Cold-shock protein, DNA-binding	131	191	2.46628E-28

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.