Pseudomonas putida BIRD-1, PPUBIRD1_0091 (tag)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0003824 catalytic activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SSF48150
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0008725 DNA-3-methyladenine glycosylase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF03352
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006284 base-excision repair
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF03352
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006281 DNA repair
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SSF48150
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database Xref Pathway Version Evidence PMID
KEGG ppb03410 Base excision repair 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
NCBIfam TIGR00624 JCVI: DNA-3-methyladenine glycosylase I IPR004597 DNA-3-methyladenine glycosylase I 2 156 8.6E-70
Pfam PF03352 Methyladenine glycosylase IPR005019 Methyladenine glycosylase 2 155 2.3E-60
PANTHER PTHR30037 DNA-3-METHYLADENINE GLYCOSYLASE 1 - - 2 157 2.6E-59
SUPERFAMILY SSF48150 DNA-glycosylase IPR011257 DNA glycosylase 1 158 3.37E-59
Gene3D G3DSA:1.10.340.30 Hypothetical protein; domain 2 - - 1 159 3.6E-61

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.