Pseudomonas putida BIRD-1, PPUBIRD1_2375

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Cellular Component GO:0016020 membrane
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00283
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0005515 protein binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF08447
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0004888 transmembrane signaling receptor activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PR00260
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006935 chemotaxis
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PR00260
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0007165 signal transduction
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00283
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database Xref Pathway Version Evidence PMID
KEGG ppb02020 Two-component system 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG ppb02030 Bacterial chemotaxis 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
SMART SM00283 MA_2 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain 232 439 2.4E-21
SMART SM00086 pac_2 IPR001610 PAC motif 218 260 9.5
SUPERFAMILY SSF55785 PYP-like sensor domain (PAS domain) IPR035965 PAS domain superfamily 155 257 9.25E-22
Coils Coil Coil - - 289 316 -
CDD cd00130 PAS IPR000014 PAS domain 155 257 1.37233E-9
Pfam PF08447 PAS fold IPR013655 PAS fold-3 168 253 4.4E-13
SMART SM00091 pas_2 IPR000014 PAS domain 143 213 0.12
Gene3D G3DSA:1.10.287.950 - - - 259 438 1.6E-42
Gene3D G3DSA:3.30.450.20 PAS domain - - 144 258 2.0E-21
SUPERFAMILY SSF58104 Methyl-accepting chemotaxis protein (MCP) signaling domain - - 234 436 3.92E-52
SMART SM00086 pac_2 IPR001610 PAC motif 96 138 8.0E-5
PRINTS PR00260 Bacterial chemotaxis sensory transducer signature IPR004090 Chemotaxis methyl-accepting receptor 256 285 2.1E-6
PANTHER PTHR24422 CHEMOTAXIS PROTEIN METHYLTRANSFERASE - - 17 138 5.7E-55
SMART SM00091 pas_2 IPR000014 PAS domain 25 91 0.012
PRINTS PR00260 Bacterial chemotaxis sensory transducer signature IPR004090 Chemotaxis methyl-accepting receptor 355 384 2.1E-6
Gene3D G3DSA:3.30.450.20 PAS domain - - 9 143 6.8E-24
NCBIfam TIGR00229 JCVI: PAS domain S-box protein IPR000014 PAS domain 144 265 7.1E-16
Pfam PF08447 PAS fold IPR013655 PAS fold-3 46 132 1.0E-13
Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain 281 435 4.7E-36
CDD cd00130 PAS IPR000014 PAS domain 33 135 4.26409E-12
NCBIfam TIGR00229 JCVI: PAS domain S-box protein IPR000014 PAS domain 33 142 4.3E-19
SUPERFAMILY SSF55785 PYP-like sensor domain (PAS domain) IPR035965 PAS domain superfamily 33 135 8.03E-25
CDD cd11386 MCP_signal - - 282 437 1.41848E-46

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.