Pseudomonas putida BIRD-1, PPUBIRD1_3119

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0005515 protein binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF08447
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
SUPERFAMILY SSF55073 Nucleotide cyclase IPR029787 Nucleotide cyclase 133 282 3.45E-43
SMART SM00091 pas_2 IPR000014 PAS domain 7 73 5.7E-12
Gene3D G3DSA:3.30.70.270 - IPR043128 Reverse transcriptase/Diguanylate cyclase domain 127 286 1.7E-52
SMART SM00267 duf1_3 IPR000160 GGDEF domain 117 287 8.0E-57
Pfam PF08447 PAS fold IPR013655 PAS fold-3 29 96 5.4E-12
NCBIfam TIGR00229 JCVI: PAS domain S-box protein IPR000014 PAS domain 7 124 3.8E-16
CDD cd00130 PAS IPR000014 PAS domain 20 96 4.01845E-15
NCBIfam TIGR00254 JCVI: diguanylate cyclase (GGDEF) domain IPR000160 GGDEF domain 125 282 1.5E-39
Pfam PF00990 Diguanylate cyclase, GGDEF domain IPR000160 GGDEF domain 128 283 1.7E-47
FunFam G3DSA:3.30.70.270:FF:000001 Diguanylate cyclase domain protein - - 123 286 1.4E-40
SUPERFAMILY SSF55785 PYP-like sensor domain (PAS domain) IPR035965 PAS domain superfamily 13 120 2.49E-22
PANTHER PTHR46663 DIGUANYLATE CYCLASE DGCT-RELATED - - 14 282 1.7E-68
Gene3D G3DSA:3.30.450.20 PAS domain - - 9 126 3.7E-21
CDD cd01949 GGDEF IPR000160 GGDEF domain 129 283 3.4457E-58

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.