Pseudomonas putida BIRD-1, PPUBIRD1_3122
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Ontology
| Ontology | Accession | Term | GO Evidence | Evidence Ontology (ECO) Code | Reference | Comments |
|---|---|---|---|---|---|---|
| Biological Process | GO:0046279 | 3,4-dihydroxybenzoate biosynthetic process |
Inferred from Sequence Model
Term mapped from: InterPro:MF_02238
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
||
| Molecular Function | GO:0046565 | 3-dehydroshikimate dehydratase activity |
Inferred from Sequence Model
Term mapped from: InterPro:MF_02238
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
Functional Classifications Manually Assigned by PseudoCAP
|
|
Pathways
| Database | Xref | Pathway | Version | Evidence | PMID |
|---|---|---|---|---|---|
| KEGG | ppb00350 | Tyrosine metabolism | 81.0+/01-23, Jan 17 |
ECO:0000249
sequence similarity evidence used in automatic assertion |
|
| KEGG | ppb01100 | Metabolic pathways | 81.0+/01-23, Jan 17 |
ECO:0000249
sequence similarity evidence used in automatic assertion |
|
| KEGG | ppb00360 | Phenylalanine metabolism | 81.0+/01-23, Jan 17 |
ECO:0000249
sequence similarity evidence used in automatic assertion |
|
| KEGG | ppb00130 | Ubiquinone and other terpenoid-quinone biosynthesis | 81.0+/01-23, Jan 17 |
ECO:0000249
sequence similarity evidence used in automatic assertion |
Functional Predictions from Interpro
| Analysis | Accession | Description | Interpro Accession | Interpro Description | Amino Acid Start | Amino Acid Stop | E-value |
|---|---|---|---|---|---|---|---|
| Pfam | PF01261 | Xylose isomerase-like TIM barrel | IPR013022 | Xylose isomerase-like, TIM barrel domain | 18 | 261 | 1.1E-41 |
| Hamap | MF_02238 | 3-dehydroshikimate dehydratase. | IPR043700 | 3-dehydroshikimate dehydratase | 1 | 627 | 46.599529 |
| Coils | Coil | Coil | - | - | 64 | 91 | - |
| Gene3D | G3DSA:3.10.180.10 | - | IPR029068 | Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase | 290 | 436 | 6.3E-40 |
| Gene3D | G3DSA:3.10.180.10 | - | IPR029068 | Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase | 437 | 631 | 1.6E-46 |
| SUPERFAMILY | SSF54593 | Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase | IPR029068 | Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase | 287 | 621 | 9.29E-62 |
| Pfam | PF00903 | Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily | IPR004360 | Glyoxalase/fosfomycin resistance/dioxygenase domain | 440 | 563 | 9.8E-9 |
| CDD | cd08342 | HPPD_N_like | IPR041736 | 4-hydroxyphenylpyruvate dioxygenase, N-terminal | 296 | 426 | 1.4703E-22 |
| SUPERFAMILY | SSF51658 | Xylose isomerase-like | IPR036237 | Xylose isomerase-like superfamily | 1 | 270 | 1.05E-75 |
| PANTHER | PTHR12110 | HYDROXYPYRUVATE ISOMERASE | - | - | 1 | 264 | 7.9E-96 |
| Pfam | PF14696 | Hydroxyphenylpyruvate dioxygenase, HPPD, N-terminal | - | - | 293 | 426 | 6.5E-34 |
| Gene3D | G3DSA:3.20.20.150 | - | - | - | 1 | 268 | 1.5E-68 |
Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.