Pseudomonas putida BIRD-1, PPUBIRD1_3224 (rbsB)
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Ontology
| Ontology | Accession | Term | GO Evidence | Evidence Ontology (ECO) Code | Reference | Comments |
|---|
Functional Classifications Manually Assigned by PseudoCAP
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Pathways
| Database | Xref | Pathway | Version | Evidence | PMID |
|---|---|---|---|---|---|
| KEGG | ppb02010 | ABC transporters | 81.0+/01-23, Jan 17 |
ECO:0000249
sequence similarity evidence used in automatic assertion |
|
| KEGG | ppb02030 | Bacterial chemotaxis | 81.0+/01-23, Jan 17 |
ECO:0000249
sequence similarity evidence used in automatic assertion |
Functional Predictions from Interpro
| Analysis | Accession | Description | Interpro Accession | Interpro Description | Amino Acid Start | Amino Acid Stop | E-value |
|---|---|---|---|---|---|---|---|
| PANTHER | PTHR46847 | D-ALLOSE-BINDING PERIPLASMIC PROTEIN-RELATED | - | - | 9 | 318 | 4.0E-69 |
| Pfam | PF13407 | Periplasmic binding protein domain | IPR025997 | Periplasmic binding protein | 35 | 299 | 1.1E-51 |
| Gene3D | G3DSA:3.40.50.2300 | - | - | - | 143 | 280 | 2.9E-90 |
| CDD | cd19970 | PBP1_ABC_sugar_binding-like | - | - | 34 | 314 | 0.0 |
| SUPERFAMILY | SSF53822 | Periplasmic binding protein-like I | IPR028082 | Periplasmic binding protein-like I | 18 | 318 | 1.41E-70 |
| Gene3D | G3DSA:3.40.50.2300 | - | - | - | 39 | 294 | 2.9E-90 |
Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.