Pseudomonas putida BIRD-1, PPUBIRD1_3615

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0016829 lyase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PIRSF001365
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database Xref Pathway Version Evidence PMID
KEGG ppb00300 Lysine biosynthesis 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG ppb00261 Monobactam biosynthesis 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG ppb01130 Biosynthesis of antibiotics 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG ppb01230 Biosynthesis of amino acids 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG ppb01110 Biosynthesis of secondary metabolites 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG ppb01100 Metabolic pathways 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG ppb01120 Microbial metabolism in diverse environments 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
PANTHER PTHR12128 DIHYDRODIPICOLINATE SYNTHASE IPR002220 DapA-like 6 287 3.7E-56
PRINTS PR00146 Dihydrodipicolinate synthase signature IPR002220 DapA-like 132 149 3.6E-10
PRINTS PR00146 Dihydrodipicolinate synthase signature IPR002220 DapA-like 107 123 3.6E-10
PRINTS PR00146 Dihydrodipicolinate synthase signature IPR002220 DapA-like 39 60 3.6E-10
Gene3D G3DSA:3.20.20.70 Aldolase class I IPR013785 Aldolase-type TIM barrel 5 293 2.0E-90
SMART SM01130 DHDPS_2 IPR002220 DapA-like 5 294 1.9E-96
PRINTS PR00146 Dihydrodipicolinate synthase signature IPR002220 DapA-like 75 93 3.6E-10
CDD cd00408 DHDPS-like - - 9 290 2.52488E-103
Pfam PF00701 Dihydrodipicolinate synthetase family IPR002220 DapA-like 7 291 1.9E-55
PIRSF PIRSF001365 DHDPS IPR002220 DapA-like 1 295 1.3E-82
SUPERFAMILY SSF51569 Aldolase - - 5 290 4.08E-86

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.