Pseudomonas putida BIRD-1, PPUBIRD1_4181

Gene Ontology

Ontology	Accession	Term	GO Evidence	Evidence Ontology (ECO) Code	Reference	Comments
Molecular Function	GO:0003824	catalytic activity	ISM Inferred from Sequence Model Term mapped from: InterPro:SSF48557	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Biological Process	GO:0019619	3,4-dihydroxybenzoate catabolic process	ISM Inferred from Sequence Model Term mapped from: InterPro:TIGR02426	ECO:0000259 match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database	Xref	Pathway	Version	Evidence	PMID
KEGG	ppb01100	Metabolic pathways	81.0+/01-23, Jan 17	ECO:0000249 sequence similarity evidence used in automatic assertion
KEGG	ppb01220	Degradation of aromatic compounds	81.0+/01-23, Jan 17	ECO:0000249 sequence similarity evidence used in automatic assertion
KEGG	ppb00362	Benzoate degradation	81.0+/01-23, Jan 17	ECO:0000249 sequence similarity evidence used in automatic assertion
KEGG	ppb01120	Microbial metabolism in diverse environments	81.0+/01-23, Jan 17	ECO:0000249 sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis	Accession	Description	Interpro Accession	Interpro Description	Amino Acid Start	Amino Acid Stop	E-value
PRINTS	PR00145	Argininosuccinate lyase family signature	-	-	99	121	2.5E-12
SMART	SM00998	ADSL_C_2	IPR019468	Adenylosuccinate lyase C-terminal	363	442	3.4E-25
PRINTS	PR00149	Fumarate lyase superfamily signature	IPR000362	Fumarate lyase family	230	257	4.5E-26
FunFam	G3DSA:1.10.40.30:FF:000007	Adenylosuccinate lyase	-	-	363	444	1.3E-23
Gene3D	G3DSA:1.10.40.30	-	-	-	362	450	8.4E-29
PRINTS	PR00149	Fumarate lyase superfamily signature	IPR000362	Fumarate lyase family	275	291	4.5E-26
PANTHER	PTHR43172	ADENYLOSUCCINATE LYASE	-	-	3	446	2.2E-120
CDD	cd01597	pCLME	-	-	5	444	0.0
Pfam	PF10397	Adenylosuccinate lyase C-terminus	IPR019468	Adenylosuccinate lyase C-terminal	364	441	2.7E-17
FunFam	G3DSA:1.20.200.10:FF:000014	3-carboxy-cis,cis-muconate cycloisomerase	-	-	1	360	0.0
Pfam	PF00206	Lyase	IPR022761	Fumarate lyase, N-terminal	11	300	2.0E-80
NCBIfam	TIGR02426	JCVI: 3-carboxy-cis,cis-muconate cycloisomerase	IPR012789	3-carboxy-cis,cis-muconate cycloisomerase-like	5	348	0.0
PRINTS	PR00145	Argininosuccinate lyase family signature	-	-	140	160	2.5E-12
PRINTS	PR00145	Argininosuccinate lyase family signature	-	-	275	291	2.5E-12
SUPERFAMILY	SSF48557	L-aspartase-like	IPR008948	L-Aspartase-like	5	447	4.87E-128
PRINTS	PR00149	Fumarate lyase superfamily signature	IPR000362	Fumarate lyase family	100	118	4.5E-26
PRINTS	PR00145	Argininosuccinate lyase family signature	-	-	230	254	2.5E-12
Gene3D	G3DSA:1.20.200.10	Fumarase/aspartase (Central domain)	-	-	1	361	4.9E-120
PRINTS	PR00149	Fumarate lyase superfamily signature	IPR000362	Fumarate lyase family	145	163	4.5E-26

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.