Pseudomonas putida BIRD-1, PPUBIRD1_4362

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0006812 cation transport
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR01297
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Cellular Component GO:0016020 membrane
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR01297
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0055085 transmembrane transport
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR01297
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0008324 cation transmembrane transporter activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR01297
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
NCBIfam NF033827 NCBIFAM: CDF family Co(II)/Ni(II) efflux transporter DmeF - - 10 306 1.0E-108
SUPERFAMILY SSF161111 Cation efflux protein transmembrane domain-like IPR027469 Cation efflux transmembrane domain superfamily 22 234 1.01E-50
NCBIfam TIGR01297 JCVI: cation diffusion facilitator family transporter IPR002524 Cation efflux protein 23 307 4.0E-66
PANTHER PTHR11562 CATION EFFLUX PROTEIN/ ZINC TRANSPORTER - - 12 307 3.4E-58
Pfam PF01545 Cation efflux family IPR002524 Cation efflux protein 27 233 5.5E-42
Gene3D G3DSA:1.20.1510.10 Cation efflux protein transmembrane domain IPR027469 Cation efflux transmembrane domain superfamily 22 232 3.6E-48

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.