Pseudomonas putida BIRD-1, PPUBIRD1_4369

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Cellular Component GO:0016020 membrane
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00672
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0007165 signal transduction
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00672
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database Xref Pathway Version Evidence PMID
KEGG ppb02025 Biofilm formation - Pseudomonas aeruginosa 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
PANTHER PTHR46663 DIGUANYLATE CYCLASE DGCT-RELATED - - 81 419 1.5E-76
Pfam PF00990 Diguanylate cyclase, GGDEF domain IPR000160 GGDEF domain 248 404 1.4E-50
CDD cd01949 GGDEF IPR000160 GGDEF domain 250 408 7.42814E-65
CDD cd06225 HAMP - - 185 230 0.0015722
Gene3D G3DSA:3.30.70.270 - IPR043128 Reverse transcriptase/Diguanylate cyclase domain 234 408 9.1E-59
Pfam PF17152 Periplasmic sensor domain IPR033417 Periplasmic sensor domain CHASE8 44 144 4.3E-28
NCBIfam TIGR00254 JCVI: diguanylate cyclase (GGDEF) domain IPR000160 GGDEF domain 244 410 1.3E-46
SUPERFAMILY SSF55073 Nucleotide cyclase IPR029787 Nucleotide cyclase 253 410 2.35E-49
SMART SM00267 duf1_3 IPR000160 GGDEF domain 237 410 2.0E-68
Pfam PF00672 HAMP domain IPR003660 HAMP domain 182 231 1.7E-5
FunFam G3DSA:3.30.70.270:FF:000001 Diguanylate cyclase domain protein - - 243 411 1.7E-45

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.