Pseudomonas putida HB3267, B479_02420 (dnaG)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0006269 DNA replication, synthesis of RNA primer
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PIRSF002811
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0016779 nucleotidyltransferase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF10410
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003896 DNA primase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PIRSF002811
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006260 DNA replication
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00400
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003677 DNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00400
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0008270 zinc ion binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PIRSF002811
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database Xref Pathway Version Evidence PMID
KEGG ppuh03030 DNA replication 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
SUPERFAMILY SSF117023 DNA primase DnaG, C-terminal domain - - 521 648 1.31E-31
Pfam PF01807 CHC2 zinc finger IPR002694 Zinc finger, CHC2-type 6 100 1.4E-41
Gene3D G3DSA:3.90.580.10 - IPR036977 DNA Primase, CHC2-type zinc finger 2 101 1.3E-36
Pfam PF08275 DNA primase catalytic core, N-terminal domain IPR013264 DNA primase, catalytic core, N-terminal 126 254 1.7E-43
Gene3D G3DSA:3.90.980.10 - IPR037068 DNA primase, catalytic core, N-terminal domain superfamily 113 242 4.4E-48
Pfam PF08278 DNA primase DnaG DnaB-binding IPR013173 DNA primase DnaG, DnaB-binding domain 525 645 1.6E-26
CDD cd03364 TOPRIM_DnaG_primases IPR034151 Bacterial DnaG primase, TOPRIM domain 261 342 3.06017E-34
SUPERFAMILY SSF57783 Zinc beta-ribbon - - 4 100 3.4E-38
MobiDBLite mobidb-lite consensus disorder prediction - - 95 115 -
SUPERFAMILY SSF56731 DNA primase core - - 116 427 1.06E-108
PIRSF PIRSF002811 DnaG IPR030846 DNA primase DnaG, bacteria 2 654 0.0
FunFam G3DSA:3.90.580.10:FF:000001 DNA primase - - 1 101 2.7E-42
Gene3D G3DSA:1.20.50.20 DnaG, RNA polymerase domain, helical bundle - - 371 426 1.5E-20
SMART SM00400 primzinc3 IPR002694 Zinc finger, CHC2-type 36 90 1.6E-34
MobiDBLite mobidb-lite consensus disorder prediction - - 475 506 -
MobiDBLite mobidb-lite consensus disorder prediction - - 475 515 -
FunFam G3DSA:3.40.1360.10:FF:000002 DNA primase - - 243 370 5.9E-53
SMART SM00493 toprim5 IPR006171 TOPRIM domain 261 332 2.1E-19
Gene3D G3DSA:3.40.1360.10 - - - 243 370 2.9E-41
MobiDBLite mobidb-lite consensus disorder prediction - - 95 111 -
Pfam PF10410 DnaB-helicase binding domain of primase IPR019475 DNA primase, DnaB-helicase binding domain 373 427 1.9E-9
PANTHER PTHR30313 DNA PRIMASE - - 1 644 0.0
NCBIfam TIGR01391 JCVI: DNA primase IPR006295 DNA primase, DnaG 5 420 0.0
SMART SM00766 dnag_dnab_bind_seq8d IPR013173 DNA primase DnaG, DnaB-binding domain 521 646 1.9E-39
Hamap MF_00974 DNA primase [dnaG]. IPR030846 DNA primase DnaG, bacteria 4 647 30.281935
Gene3D G3DSA:1.10.860.10 DNAb Helicase; Chain A IPR016136 DNA helicase DnaB, N-terminal/DNA primase DnaG, C-terminal 513 654 5.0E-34
Pfam PF13662 Toprim domain IPR006171 TOPRIM domain 261 327 1.3E-16
FunFam G3DSA:3.90.980.10:FF:000001 DNA primase - - 110 242 6.0E-49

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.