Ontology | Accession | Term | GO Evidence | Evidence Ontology (ECO) Code | Reference | Comments |
---|---|---|---|---|---|---|
Cellular Component | GO:0043190 | ATP-binding cassette (ABC) transporter complex |
Inferred from Sequence Model
Term mapped from: InterPro:PF04069
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
||
Cellular Component | GO:0042597 | periplasmic space |
Inferred from Sequence Model
Term mapped from: InterPro:cd13640
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
||
Molecular Function | GO:0033265 | choline binding |
Inferred from Sequence Model
Term mapped from: InterPro:cd13640
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
||
Molecular Function | GO:0022857 | transmembrane transporter activity |
Inferred from Sequence Model
Term mapped from: InterPro:PF04069
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
||
Biological Process | GO:0015871 | choline transport |
Inferred from Sequence Model
Term mapped from: InterPro:cd13640
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
||
Biological Process | GO:0055085 | transmembrane transport |
Inferred from Sequence Model
Term mapped from: InterPro:PF04069
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
|
Database | Xref | Pathway | Version | Evidence | PMID |
---|---|---|---|---|---|
KEGG | psb02010 | ABC transporters | 81.0+/01-23, Jan 17 |
ECO:0000249
sequence similarity evidence used in automatic assertion |
Analysis | Accession | Description | Interpro Accession | Interpro Description | Amino Acid Start | Amino Acid Stop | E-value |
---|---|---|---|---|---|---|---|
CDD | cd13640 | PBP2_ChoX | IPR017783 | Choline ABC transporter, substrate-binding protein | 29 | 292 | 0.0 |
SUPERFAMILY | SSF53850 | Periplasmic binding protein-like II | - | - | 22 | 296 | 3.44E-79 |
Gene3D | G3DSA:3.40.190.10 | - | - | - | 30 | 289 | 4.9E-92 |
Gene3D | G3DSA:3.40.190.100 | - | - | - | 111 | 221 | 4.9E-92 |
Pfam | PF04069 | Substrate binding domain of ABC-type glycine betaine transport system | IPR007210 | ABC-type glycine betaine transport system, substrate-binding domain | 29 | 279 | 2.2E-54 |
NCBIfam | TIGR03414 | JCVI: choline ABC transporter substrate-binding protein | IPR017783 | Choline ABC transporter, substrate-binding protein | 21 | 308 | 0.0 |