Pseudomonas syringae pv. syringae B728a, Psyr_0035

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0006355 regulation of transcription, DNA-templated
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00126
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003700 DNA-binding transcription factor activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00126
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
PRINTS PR00039 LysR bacterial regulatory protein HTH signature IPR000847 Transcription regulator HTH, LysR 39 50 2.4E-6
Gene3D G3DSA:3.40.190.10 - - - 115 305 1.5E-33
PRINTS PR00039 LysR bacterial regulatory protein HTH signature IPR000847 Transcription regulator HTH, LysR 60 71 2.4E-6
PRINTS PR00039 LysR bacterial regulatory protein HTH signature IPR000847 Transcription regulator HTH, LysR 50 60 2.4E-6
Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IPR000847 Transcription regulator HTH, LysR 24 82 2.0E-19
Pfam PF03466 LysR substrate binding domain IPR005119 LysR, substrate-binding 112 309 7.3E-22
SUPERFAMILY SSF46785 Winged helix DNA-binding domain IPR036390 Winged helix DNA-binding domain superfamily 20 102 2.76E-20
Gene3D G3DSA:3.40.190.10 - - - 181 280 1.5E-33
FunFam G3DSA:3.40.190.10:FF:000131 LysR family transcriptional regulator - - 115 195 1.2E-35
PANTHER PTHR30537 HTH-TYPE TRANSCRIPTIONAL REGULATOR - - 22 313 2.5E-58
CDD cd08482 PBP2_TrpI IPR037418 HTH-type transcriptional regulator TrpI, PBP2 111 305 9.5552E-101
Gene3D G3DSA:1.10.10.10 - IPR036388 Winged helix-like DNA-binding domain superfamily 18 103 2.7E-20
SUPERFAMILY SSF53850 Periplasmic binding protein-like II - - 111 312 3.98E-26

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.