Pseudomonas syringae pv. syringae B728a, Psyr_2219

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0003700 DNA-binding transcription factor activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00126
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006355 regulation of transcription, DNA-templated
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00126
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IPR000847 Transcription regulator HTH, LysR 29 84 6.7E-14
Pfam PF03466 LysR substrate binding domain IPR005119 LysR, substrate-binding 110 312 1.2E-40
SUPERFAMILY SSF53850 Periplasmic binding protein-like II - - 109 314 6.88E-47
PANTHER PTHR30537 HTH-TYPE TRANSCRIPTIONAL REGULATOR - - 27 312 2.9E-76
FunFam G3DSA:3.40.190.290:FF:000001 Transcriptional regulator, LysR family - - 109 311 5.5E-66
CDD cd08422 PBP2_CrgA_like - - 113 308 4.31059E-79
SUPERFAMILY SSF46785 Winged helix DNA-binding domain IPR036390 Winged helix DNA-binding domain superfamily 27 132 1.34E-16
Gene3D G3DSA:3.40.190.290 - - - 109 312 2.1E-61
Gene3D G3DSA:1.10.10.10 - IPR036388 Winged helix-like DNA-binding domain superfamily 25 108 1.7E-15

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.