Pseudomonas syringae pv. syringae B728a, Psyr_4004

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0055085 transmembrane transport
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR00711
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0022857 transmembrane transporter activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR00711
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Cellular Component GO:0016020 membrane
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR00711
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
PRINTS PR01036 Tetracycline resistance protein TetB signature - - 401 420 9.3E-11
PRINTS PR01036 Tetracycline resistance protein TetB signature - - 107 127 9.3E-11
CDD cd17502 MFS_Azr1_MDR_like - - 18 411 2.57709E-97
Gene3D G3DSA:1.20.1720.10 Multidrug resistance protein D - - 14 207 8.8E-56
NCBIfam TIGR00711 JCVI: DHA2 family efflux MFS transporter permease subunit IPR004638 Drug resistance transporter EmrB-like 14 419 8.8E-73
Pfam PF07690 Major Facilitator Superfamily IPR011701 Major facilitator superfamily 18 410 3.9E-56
PRINTS PR01036 Tetracycline resistance protein TetB signature - - 137 161 9.3E-11
PRINTS PR01036 Tetracycline resistance protein TetB signature - - 203 221 9.3E-11
Gene3D G3DSA:1.20.1250.20 MFS general substrate transporter like domains IPR036259 MFS transporter superfamily 263 493 2.3E-10
PRINTS PR01036 Tetracycline resistance protein TetB signature - - 17 41 9.3E-11
FunFam G3DSA:1.20.1720.10:FF:000004 EmrB/QacA family drug resistance transporter - - 15 224 1.1E-72
SUPERFAMILY SSF103473 MFS general substrate transporter IPR036259 MFS transporter superfamily 7 490 2.09E-71
PANTHER PTHR23501 MAJOR FACILITATOR SUPERFAMILY - - 11 489 3.0E-116

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.