Pseudomonas syringae pv. syringae B728a, Psyr_4716
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Gene Ontology
| Ontology | Accession | Term | GO Evidence | Evidence Ontology (ECO) Code | Reference | Comments |
|---|---|---|---|---|---|---|
| Molecular Function | GO:0008115 | sarcosine oxidase activity |
Inferred from Sequence Model
Term mapped from: InterPro:TIGR01375
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
||
| Biological Process | GO:1901053 | sarcosine catabolic process |
Inferred from Sequence Model
Term mapped from: InterPro:TIGR01375
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
||
| Molecular Function | GO:0005515 | protein binding |
Inferred from Sequence Model
Term mapped from: InterPro:G3DSA:3.30.1360.120
|
ECO:0000259 match to InterPro signature evidence used in automatic assertion |
Functional Classifications Manually Assigned by PseudoCAP
|
|
Pathways
| Database | Xref | Pathway | Version | Evidence | PMID |
|---|---|---|---|---|---|
| MetaCyc | glycine betaine degradation I | InterPro 5.36-75.0 |
ECO:0000259
match to InterPro signature evidence used in automatic assertion |
||
| KEGG | psb00260 | Glycine, serine and threonine metabolism | 81.0+/01-23, Jan 17 |
ECO:0000249
sequence similarity evidence used in automatic assertion |
|
| MetaCyc | creatinine degradation II | InterPro 5.36-75.0 |
ECO:0000259
match to InterPro signature evidence used in automatic assertion |
||
| KEGG | psb01100 | Metabolic pathways | 81.0+/01-23, Jan 17 |
ECO:0000249
sequence similarity evidence used in automatic assertion |
Functional Predictions from Interpro
| Analysis | Accession | Description | Interpro Accession | Interpro Description | Amino Acid Start | Amino Acid Stop | E-value |
|---|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF103025 | Folate-binding domain | - | - | 84 | 206 | 3.45E-22 |
| Pfam | PF04268 | Sarcosine oxidase, gamma subunit family | IPR007375 | Sarcosine oxidase, gamma subunit | 53 | 203 | 3.3E-77 |
| NCBIfam | TIGR01375 | JCVI: sarcosine oxidase subunit gamma family protein | IPR006280 | Sarcosine oxidase, gamma subunit, heterotetrameric | 53 | 203 | 4.0E-50 |
| Gene3D | G3DSA:3.30.1360.120 | Probable tRNA modification gtpase trme; domain 1 | IPR027266 | GTP-binding protein TrmE/Aminomethyltransferase GcvT, domain 1 | 38 | 204 | 7.8E-56 |
| Gene3D | G3DSA:3.30.70.1520 | Heterotetrameric sarcosine oxidase | - | - | 46 | 126 | 7.8E-56 |
Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.