Pseudomonas syringae pv. syringae B728a, Psyr_4907

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Cellular Component GO:0016020 membrane
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00015
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0007165 signal transduction
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00015
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006935 chemotaxis
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PR00260
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0004888 transmembrane signaling receptor activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PR00260
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0005515 protein binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF08447
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database Xref Pathway Version Evidence PMID
KEGG psb02030 Bacterial chemotaxis 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG psb02020 Two-component system 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Pfam PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain 275 438 6.8E-38
PRINTS PR00260 Bacterial chemotaxis sensory transducer signature IPR004090 Chemotaxis methyl-accepting receptor 326 353 2.5E-20
Pfam PF08447 PAS fold IPR013655 PAS fold-3 43 128 8.6E-18
PANTHER PTHR32089 METHYL-ACCEPTING CHEMOTAXIS PROTEIN MCPB - - 251 441 2.8E-51
NCBIfam TIGR00229 JCVI: PAS domain S-box protein IPR000014 PAS domain 153 263 5.8E-14
Gene3D G3DSA:3.30.450.20 PAS domain - - 6 126 3.2E-19
SUPERFAMILY SSF55785 PYP-like sensor domain (PAS domain) IPR035965 PAS domain superfamily 30 132 2.42E-24
SMART SM00283 MA_2 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain 246 447 2.8E-23
SUPERFAMILY SSF58104 Methyl-accepting chemotaxis protein (MCP) signaling domain - - 249 441 2.88E-55
CDD cd00130 PAS IPR000014 PAS domain 152 254 4.7167E-8
SUPERFAMILY SSF55785 PYP-like sensor domain (PAS domain) IPR035965 PAS domain superfamily 153 254 4.19E-22
Gene3D G3DSA:1.10.287.950 - - - 248 444 8.5E-46
CDD cd11386 MCP_signal - - 275 438 5.5303E-49
PRINTS PR00260 Bacterial chemotaxis sensory transducer signature IPR004090 Chemotaxis methyl-accepting receptor 355 384 2.5E-20
Pfam PF08447 PAS fold IPR013655 PAS fold-3 165 250 3.3E-15
Gene3D G3DSA:3.30.450.20 PAS domain - - 127 247 3.9E-19
CDD cd00130 PAS IPR000014 PAS domain 30 132 5.84713E-12
SMART SM00086 pac_2 IPR001610 PAC motif 215 257 0.039
PRINTS PR00260 Bacterial chemotaxis sensory transducer signature IPR004090 Chemotaxis methyl-accepting receptor 253 282 2.5E-20
SMART SM00086 pac_2 IPR001610 PAC motif 93 135 0.0031
NCBIfam TIGR00229 JCVI: PAS domain S-box protein IPR000014 PAS domain 23 141 2.8E-15

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.