Pseudomonas aeruginosa UCBPP-PA14, PA14_08710 (nusG)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0006354 DNA-templated transcription, elongation
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF02357
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0140673 co-transcriptional chromatin reassembly
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF02357
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0032784 regulation of DNA-templated transcription, elongation
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PR00338
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Transcription, RNA processing and degradation Other UCBPP-PA14 genes in this class

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Pfam PF00467 KOW motif IPR005824 KOW 126 156 7.7E-9
CDD cd06091 KOW_NusG - - 121 176 2.35121E-25
SMART SM00739 kow_9 IPR005824 KOW 123 150 1.4E-7
PRINTS PR00338 Transcription termination factor NUSG signature IPR001062 Transcription antitermination protein, NusG 153 169 8.4E-20
Gene3D G3DSA:2.30.30.30 - IPR014722 Large ribosomal subunit protein uL2, domain 2 119 176 4.3E-27
FunFam G3DSA:2.30.30.30:FF:000002 Transcription termination/antitermination factor NusG - - 117 177 3.8E-31
Hamap MF_00948 Transcription termination/antitermination protein NusG [nusG]. IPR001062 Transcription antitermination protein, NusG 2 177 24.831203
Pfam PF02357 Transcription termination factor nusG IPR006645 NusG-like, N-terminal 3 108 3.7E-29
SUPERFAMILY SSF50104 Translation proteins SH3-like domain IPR008991 Translation protein SH3-like domain superfamily 121 177 1.16E-19
SUPERFAMILY SSF82679 N-utilization substance G protein NusG, N-terminal domain IPR036735 NusG, N-terminal domain superfamily 3 113 6.54E-39
SMART SM00738 nusgn_4 IPR006645 NusG-like, N-terminal 2 111 6.3E-48
CDD cd09891 NGN_Bact_1 IPR047050 NusG, N-terminal 4 111 3.82087E-54
PANTHER PTHR30265 RHO-INTERACTING TRANSCRIPTION TERMINATION FACTOR NUSG IPR043425 NusG-like 2 177 1.5E-57
PRINTS PR00338 Transcription termination factor NUSG signature IPR001062 Transcription antitermination protein, NusG 57 69 8.4E-20
FunFam G3DSA:3.30.70.940:FF:000001 Transcription termination/antitermination protein NusG - - 1 113 3.8E-66
NCBIfam TIGR00922 JCVI: transcription termination/antitermination protein NusG IPR001062 Transcription antitermination protein, NusG 5 177 4.3E-66
Gene3D G3DSA:3.30.70.940 - IPR036735 NusG, N-terminal domain superfamily 1 112 4.1E-42
PRINTS PR00338 Transcription termination factor NUSG signature IPR001062 Transcription antitermination protein, NusG 135 150 8.4E-20

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.