Pseudomonas aeruginosa UCBPP-PA14, PA14_08780 (rpoC)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0003677 DNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00623
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003899 DNA-directed 5'-3' RNA polymerase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00623
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006351 transcription, DNA-templated
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00623
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Transcription, RNA processing and degradation Other UCBPP-PA14 genes in this class

Pathways

Database Xref Pathway Version Evidence PMID
KEGG pau03020 RNA polymerase 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG pau01100 Metabolic pathways 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG pau00230 Purine metabolism 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG pau00240 Pyrimidine metabolism 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Coils Coil Coil - - 191 211 -
Pfam PF04983 RNA polymerase Rpb1, domain 3 IPR007066 RNA polymerase Rpb1, domain 3 489 643 5.7E-30
MobiDBLite mobidb-lite consensus disorder prediction - - 1367 1399 -
PANTHER PTHR19376 DNA-DIRECTED RNA POLYMERASE IPR045867 DNA-directed RNA polymerase, subunit beta-prime 23 1363 0.0
Gene3D G3DSA:2.40.40.20 - - - 332 486 5.6E-48
CDD cd02655 RNAP_beta'_C - - 907 1363 8.21481E-83
CDD cd01609 RNAP_beta'_N - - 15 813 0.0
Pfam PF05000 RNA polymerase Rpb1, domain 4 IPR007083 RNA polymerase Rpb1, domain 4 674 763 3.4E-20
Gene3D G3DSA:1.10.150.390 - - - 1316 1376 6.1E-27
Gene3D G3DSA:1.10.40.90 - - - 370 413 2.4E-21
SUPERFAMILY SSF64484 beta and beta-prime subunits of DNA dependent RNA-polymerase - - 16 1363 0.0
Pfam PF00623 RNA polymerase Rpb1, domain 2 IPR000722 RNA polymerase, alpha subunit 344 381 2.4E-7
NCBIfam TIGR02386 JCVI: DNA-directed RNA polymerase subunit beta' IPR012754 DNA-directed RNA polymerase, subunit beta-prime, bacterial type 19 1366 0.0
Gene3D G3DSA:2.40.50.100 - - - 1023 1126 3.9E-33
Gene3D G3DSA:1.10.274.100 RNA polymerase Rpb1, domain 3 IPR042102 RNA polymerase Rpb1, domain 3 superfamily 489 637 4.3E-44
Gene3D G3DSA:1.10.132.30 - IPR038120 RNA polymerase Rpb1, funnel domain superfamily 638 790 7.7E-68
FunFam G3DSA:1.10.40.90:FF:000001 DNA-directed RNA polymerase subunit beta - - 372 413 3.5E-22
Gene3D G3DSA:2.40.50.100 - - - 948 1022 1.1E-24
FunFam G3DSA:4.10.860.120:FF:000001 DNA-directed RNA polymerase subunit beta - - 12 132 5.5E-69
Pfam PF00623 RNA polymerase Rpb1, domain 2 IPR000722 RNA polymerase, alpha subunit 389 485 2.7E-28
Gene3D G3DSA:2.40.50.100 - - - 1151 1215 2.7E-68
Gene3D G3DSA:4.10.860.120 RNA polymerase II, clamp domain IPR044893 RNA polymerase Rpb1, clamp domain superfamily 8 142 1.5E-24
Pfam PF04997 RNA polymerase Rpb1, domain 1 IPR007080 RNA polymerase Rpb1, domain 1 16 342 2.6E-90
Hamap MF_01322 DNA-directed RNA polymerase subunit beta' [rpoC]. IPR012754 DNA-directed RNA polymerase, subunit beta-prime, bacterial type 14 1387 19.055861
FunFam G3DSA:1.10.132.30:FF:000003 DNA-directed RNA polymerase subunit beta - - 638 790 1.1E-76
Pfam PF04998 RNA polymerase Rpb1, domain 5 IPR007081 RNA polymerase Rpb1, domain 5 766 1316 2.8E-77
Gene3D G3DSA:1.10.1790.20 - - - 1135 1314 2.7E-68
FunFam G3DSA:1.10.150.390:FF:000002 DNA-directed RNA polymerase subunit beta'' - - 1316 1376 1.3E-31
SMART SM00663 rpolaneu7 IPR006592 RNA polymerase, N-terminal 235 514 0.0

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.