Pseudomonas aeruginosa UCBPP-PA14, PA14_08910 (rpsC)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0003676 nucleic acid binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00322
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003735 structural constituent of ribosome
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR01009
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003723 RNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF07650
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006412 translation
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR01009
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Translation, post-translational modification, degradation Other UCBPP-PA14 genes in this class

Pathways

Database Xref Pathway Version Evidence PMID
KEGG pau03010 Ribosome 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
SUPERFAMILY SSF54814 Prokaryotic type KH domain (KH-domain type II) IPR009019 K homology domain superfamily, prokaryotic type 2 106 7.85E-39
Hamap MF_01309_B 30S ribosomal protein S3 [rpsC]. IPR005704 Small ribosomal subunit protein uS3, bacterial-type 1 206 40.231964
SMART SM00322 kh_6 IPR004087 K Homology domain 60 125 3.0E-9
FunFam G3DSA:3.30.1140.32:FF:000001 30S ribosomal protein S3 - - 109 228 1.5E-64
NCBIfam TIGR01009 JCVI: 30S ribosomal protein S3 IPR005704 Small ribosomal subunit protein uS3, bacterial-type 1 209 7.0E-99
Gene3D G3DSA:3.30.300.20 - IPR015946 K homology domain-like, alpha/beta 18 107 4.4E-30
FunFam G3DSA:3.30.300.20:FF:000001 30S ribosomal protein S3 - - 17 107 1.1E-37
Pfam PF07650 KH domain IPR004044 K Homology domain, type 2 38 111 5.5E-22
CDD cd02412 KH-II_30S_S3 - - 2 109 3.76299E-56
Gene3D G3DSA:3.30.1140.32 - IPR036419 Ribosomal protein S3, C-terminal domain superfamily 109 227 5.8E-45
PANTHER PTHR11760 30S/40S RIBOSOMAL PROTEIN S3 - - 13 211 4.1E-64
SUPERFAMILY SSF54821 Ribosomal protein S3 C-terminal domain IPR036419 Ribosomal protein S3, C-terminal domain superfamily 108 206 9.94E-43
Pfam PF00189 Ribosomal protein S3, C-terminal domain IPR001351 Small ribosomal subunit protein uS3, C-terminal 120 202 2.6E-41

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.