Pseudomonas aeruginosa UCBPP-PA14, PA14_09030 (rpmD)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0006412 translation
ISM
Inferred from Sequence Model
Term mapped from: InterPro:MF_01371_B
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Cellular Component GO:0015934 large ribosomal subunit
ISM
Inferred from Sequence Model
Term mapped from: InterPro:MF_01371_B
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003735 structural constituent of ribosome
ISM
Inferred from Sequence Model
Term mapped from: InterPro:MF_01371_B
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Translation, post-translational modification, degradation Other UCBPP-PA14 genes in this class

Pathways

Database Xref Pathway Version Evidence PMID
KEGG pau03010 Ribosome 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
NCBIfam TIGR01308 JCVI: 50S ribosomal protein L30 IPR005996 Large ribosomal subunit protein uL30, bacterial-type 4 57 1.3E-19
Hamap MF_01371_B 50S ribosomal protein L30 [rpmD]. IPR005996 Large ribosomal subunit protein uL30, bacterial-type 1 58 19.750549
PIRSF PIRSF002211 RPL30p IPR005996 Large ribosomal subunit protein uL30, bacterial-type 1 58 5.8E-24
CDD cd01658 Ribosomal_L30 IPR005996 Large ribosomal subunit protein uL30, bacterial-type 4 57 6.95923E-23
SUPERFAMILY SSF55129 Ribosomal protein L30p/L7e IPR036919 Large ribosomal subunit protein uL30, ferredoxin-like fold domain superfamily 1 57 5.89E-20
Gene3D G3DSA:3.30.1390.20 - IPR036919 Large ribosomal subunit protein uL30, ferredoxin-like fold domain superfamily 1 58 1.3E-22
Pfam PF00327 Ribosomal protein L30p/L7e IPR016082 Large ribosomal subunit protein uL30-like, ferredoxin-like fold domain 4 53 7.7E-18
FunFam G3DSA:3.30.1390.20:FF:000001 50S ribosomal protein L30 - - 1 58 4.7E-28
PANTHER PTHR15892 MITOCHONDRIAL RIBOSOMAL PROTEIN L30 IPR005996 Large ribosomal subunit protein uL30, bacterial-type 4 57 3.9E-12

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.