Pseudomonas aeruginosa UCBPP-PA14, PA14_09260 (pchR)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0043565 sequence-specific DNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF12833
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003700 DNA-binding transcription factor activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF12833
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006355 regulation of transcription, DNA-templated
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF12833
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Transcriptional regulators Other UCBPP-PA14 genes in this class

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Gene3D G3DSA:1.10.10.60 - - - 194 248 6.7E-9
PANTHER PTHR47893 REGULATORY PROTEIN PCHR - - 2 296 4.2E-75
SUPERFAMILY SSF46689 Homeodomain-like IPR009057 Homeobox-like domain superfamily 198 248 5.29E-8
SUPERFAMILY SSF46689 Homeodomain-like IPR009057 Homeobox-like domain superfamily 250 296 3.05E-9
SMART SM00342 aracneu4 IPR018060 DNA binding HTH domain, AraC-type 214 296 2.6E-30
Gene3D G3DSA:1.10.10.60 - - - 249 296 7.6E-15
Pfam PF12833 Helix-turn-helix domain IPR018060 DNA binding HTH domain, AraC-type 220 296 3.0E-21

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.