Pseudomonas aeruginosa UCBPP-PA14, PA14_09500 (opmD)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Cellular Component GO:0016020 membrane
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR01845
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0055085 transmembrane transport
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF02321
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0022857 transmembrane transporter activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR01845
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0015562 efflux transmembrane transporter activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF02321
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Membrane proteins Other UCBPP-PA14 genes in this class
Transport of small molecules Other UCBPP-PA14 genes in this class

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Coils Coil Coil - - 379 399 -
Gene3D G3DSA:1.20.1600.10 Outer membrane efflux proteins (OEP) - - 55 466 5.2E-108
Coils Coil Coil - - 185 205 -
PANTHER PTHR30203 OUTER MEMBRANE CATION EFFLUX PROTEIN - - 1 468 2.4E-88
Gene3D G3DSA:2.20.200.10 Outer membrane efflux proteins (OEP) - - 103 355 5.2E-108
SUPERFAMILY SSF56954 Outer membrane efflux proteins (OEP) - - 5 466 1.96E-94
NCBIfam TIGR01845 JCVI: efflux transporter outer membrane subunit IPR010131 RND efflux system, outer membrane lipoprotein, NodT 20 466 5.1E-94
Pfam PF02321 Outer membrane efflux protein IPR003423 Outer membrane efflux protein 285 464 3.2E-21
Pfam PF02321 Outer membrane efflux protein IPR003423 Outer membrane efflux protein 68 253 2.0E-26

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.