Pseudomonas aeruginosa UCBPP-PA14, PA14_09910

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0006355 regulation of transcription, DNA-templated
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00126
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003700 DNA-binding transcription factor activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00126
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Transcriptional regulators Other UCBPP-PA14 genes in this class

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
FunFam G3DSA:1.10.10.10:FF:000968 LysR family transcriptional regulator - - 3 87 1.1E-54
SUPERFAMILY SSF46785 Winged helix DNA-binding domain IPR036390 Winged helix DNA-binding domain superfamily 4 112 1.87E-22
CDD cd08472 PBP2_CrgA_like_3 - - 92 295 5.568E-104
Gene3D G3DSA:1.10.10.10 - IPR036388 Winged helix-like DNA-binding domain superfamily 3 87 6.8E-22
Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IPR000847 Transcription regulator HTH, LysR 5 62 2.8E-18
PANTHER PTHR30537 HTH-TYPE TRANSCRIPTIONAL REGULATOR - - 4 296 9.4E-86
Gene3D G3DSA:3.40.190.10 - - - 91 292 5.1E-64
Gene3D G3DSA:3.40.190.10 - - - 162 267 5.1E-64
SUPERFAMILY SSF53850 Periplasmic binding protein-like II - - 90 300 7.06E-42
Pfam PF03466 LysR substrate binding domain IPR005119 LysR, substrate-binding 90 294 2.3E-37

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.