Pseudomonas aeruginosa UCBPP-PA14, PA14_10010

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0006355 regulation of transcription, DNA-templated
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00392
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0030170 pyridoxal phosphate binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00155
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003700 DNA-binding transcription factor activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00392
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0009058 biosynthetic process
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00155
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Transcriptional regulators Other UCBPP-PA14 genes in this class

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
SMART SM00345 gntr3 IPR000524 Transcription regulator HTH, GntR 28 87 2.7E-15
SUPERFAMILY SSF53383 PLP-dependent transferases IPR015424 Pyridoxal phosphate-dependent transferase 133 491 1.55E-82
Pfam PF00155 Aminotransferase class I and II IPR004839 Aminotransferase, class I/classII 165 405 9.5E-18
CDD cd00609 AAT_like - - 133 487 2.22888E-59
CDD cd07377 WHTH_GntR IPR000524 Transcription regulator HTH, GntR 23 88 1.56129E-19
SUPERFAMILY SSF46785 Winged helix DNA-binding domain IPR036390 Winged helix DNA-binding domain superfamily 19 91 1.36E-19
PRINTS PR00035 GntR bacterial regulatory protein HTH signature IPR000524 Transcription regulator HTH, GntR 47 61 7.4E-7
Pfam PF00392 Bacterial regulatory proteins, gntR family IPR000524 Transcription regulator HTH, GntR 26 87 9.9E-17
Gene3D G3DSA:3.40.640.10 - IPR015421 Pyridoxal phosphate-dependent transferase, major domain 125 483 4.1E-111
PRINTS PR00035 GntR bacterial regulatory protein HTH signature IPR000524 Transcription regulator HTH, GntR 61 77 7.4E-7
Gene3D G3DSA:1.10.10.10 - IPR036388 Winged helix-like DNA-binding domain superfamily 21 106 1.3E-20
PANTHER PTHR46577 HTH-TYPE TRANSCRIPTIONAL REGULATORY PROTEIN GABR - - 2 490 0.0

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.