Pseudomonas aeruginosa UCBPP-PA14, PA14_10190

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0003677 DNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF09339
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006355 regulation of transcription, DNA-templated
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF09339
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Transcriptional regulators Other UCBPP-PA14 genes in this class

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
SUPERFAMILY SSF46785 Winged helix DNA-binding domain IPR036390 Winged helix DNA-binding domain superfamily 13 87 3.56E-13
PANTHER PTHR30136 HELIX-TURN-HELIX TRANSCRIPTIONAL REGULATOR, ICLR FAMILY - - 4 249 1.0E-39
SMART SM00346 iclrneu IPR005471 Transcription regulator IclR, N-terminal 13 103 2.6E-17
FunFam G3DSA:1.10.10.10:FF:000056 IclR family transcriptional regulator - - 10 83 1.2E-23
FunFam G3DSA:3.30.450.40:FF:000093 IclR family transcriptional regulator - - 83 247 2.7E-116
Gene3D G3DSA:3.30.450.40 - IPR029016 GAF-like domain superfamily 85 248 3.4E-19
Pfam PF01614 Bacterial transcriptional regulator IPR014757 Transcription regulator IclR, C-terminal 135 235 1.7E-6
Pfam PF09339 IclR helix-turn-helix domain IPR005471 Transcription regulator IclR, N-terminal 15 66 4.4E-15
SUPERFAMILY SSF55781 GAF domain-like - - 71 228 4.64E-21
Gene3D G3DSA:1.10.10.10 - IPR036388 Winged helix-like DNA-binding domain superfamily 6 82 8.2E-16

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.