Pseudomonas aeruginosa UCBPP-PA14, PA14_15960 (ffh)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0016887 ATPase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00382
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0005525 GTP binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00963
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Cellular Component GO:0048500 signal recognition particle
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF02978
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006614 SRP-dependent cotranslational protein targeting to membrane
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00963
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0008312 7S RNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF02978
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003924 GTPase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR00959
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Protein secretion/export apparatus Other UCBPP-PA14 genes in this class

Pathways

Database Xref Pathway Version Evidence PMID
KEGG pau02024 Quorum sensing 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG pau03060 Protein export 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG pau03070 Bacterial secretion system 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
SMART SM00963 SRP54_N_2 IPR013822 Signal recognition particle SRP54, helical bundle 1 86 2.1E-35
Gene3D G3DSA:1.20.120.140 - IPR042101 Signal recognition particle SRP54, N-terminal domain superfamily 4 306 4.3E-126
Pfam PF02978 Signal peptide binding domain IPR004125 Signal recognition particle, SRP54 subunit, M-domain 329 430 1.3E-32
SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases IPR027417 P-loop containing nucleoside triphosphate hydrolase 42 354 5.75E-59
Coils Coil Coil - - 297 324 -
Pfam PF02881 SRP54-type protein, helical bundle domain IPR013822 Signal recognition particle SRP54, helical bundle 5 82 3.6E-21
SMART SM00962 SRP54_3 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain 100 296 2.1E-115
FunFam G3DSA:3.40.50.300:FF:000022 Signal recognition particle 54 kDa subunit - - 92 285 2.6E-78
Hamap MF_00306 Signal recognition particle 54 kDa protein [srp54]. IPR022941 Signal recognition particle, SRP54 subunit 5 443 34.471298
Pfam PF00448 SRP54-type protein, GTPase domain IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain 100 296 3.7E-74
PANTHER PTHR11564 SIGNAL RECOGNITION PARTICLE 54K PROTEIN SRP54 IPR022941 Signal recognition particle, SRP54 subunit 1 441 0.0
SUPERFAMILY SSF47446 Signal peptide-binding domain IPR036891 Signal recognition particle, SRP54 subunit, M-domain superfamily 329 433 8.99E-35
Gene3D G3DSA:3.40.50.300 - IPR027417 P-loop containing nucleoside triphosphate hydrolase 90 285 4.3E-126
NCBIfam TIGR00959 JCVI: signal recognition particle protein IPR004780 Signal recognition particle protein 2 432 0.0
CDD cd18539 SRP_G - - 101 294 8.40886E-104
SMART SM00382 AAA_5 IPR003593 AAA+ ATPase domain 99 247 3.2E-10
Gene3D G3DSA:1.10.260.30 - IPR036891 Signal recognition particle, SRP54 subunit, M-domain superfamily 310 448 2.9E-43

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.