Pseudomonas aeruginosa UCBPP-PA14, PA14_17280

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0016879 ligase activity, forming carbon-nitrogen bonds
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PTHR43033
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0008033 tRNA processing
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PTHR43033
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0000166 nucleotide binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PTHR43033
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0005524 ATP binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PTHR43033
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Cellular Component GO:0005737 cytoplasm
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF09179
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Cell division Other UCBPP-PA14 genes in this class

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Pfam PF11734 TilS substrate C-terminal domain IPR012796 Lysidine-tRNA(Ile) synthetase, C-terminal 364 432 9.0E-16
SUPERFAMILY SSF52402 Adenine nucleotide alpha hydrolases-like - - 17 232 1.12E-61
NCBIfam TIGR02432 JCVI: tRNA lysidine(34) synthetase TilS IPR012795 tRNA(Ile)-lysidine synthase, N-terminal 24 203 2.4E-51
Hamap MF_01161 tRNA(Ile)-lysidine synthase [tilS]. IPR012094 tRNA(Ile)-lysidine synthase 7 396 23.031599
NCBIfam TIGR02433 JCVI: tRNA lysidine(34) synthetase TilS C-terminal domain IPR012796 Lysidine-tRNA(Ile) synthetase, C-terminal 364 409 7.1E-14
SUPERFAMILY SSF56037 PheT/TilS domain - - 337 434 1.15E-18
Pfam PF01171 PP-loop family IPR011063 tRNA(Ile)-lysidine/2-thiocytidine synthase, N-terminal 23 199 2.0E-59
SMART SM00977 TilS_C_a_2_a IPR012796 Lysidine-tRNA(Ile) synthetase, C-terminal 364 432 2.1E-19
CDD cd01992 PP-ATPase IPR012795 tRNA(Ile)-lysidine synthase, N-terminal 23 203 2.15109E-76
SUPERFAMILY SSF82829 MesJ substrate recognition domain-like - - 248 328 2.22E-17
Gene3D G3DSA:1.20.59.20 - - - 237 325 5.0E-12
Gene3D G3DSA:3.40.50.620 HUPs IPR014729 Rossmann-like alpha/beta/alpha sandwich fold 16 233 3.7E-76
PANTHER PTHR43033 TRNA(ILE)-LYSIDINE SYNTHASE-RELATED IPR012094 tRNA(Ile)-lysidine synthase 24 277 1.4E-63
Pfam PF09179 TilS substrate binding domain IPR015262 tRNA(Ile)-lysidine synthase, substrate-binding domain 260 323 5.1E-13

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.