Pseudomonas aeruginosa UCBPP-PA14, PA14_17440 (truD)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0009451 RNA modification
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SSF55120
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003723 RNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SSF55120
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0001522 pseudouridine synthesis
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SSF55120
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0009982 pseudouridine synthase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SSF55120
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Translation, post-translational modification, degradation Other UCBPP-PA14 genes in this class

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
CDD cd02575 PseudoU_synth_EcTruD - - 22 341 1.98441E-123
Pfam PF01142 tRNA pseudouridine synthase D (TruD) IPR001656 Pseudouridine synthase, TruD 189 340 1.2E-17
Gene3D G3DSA:3.30.2350.20 TruD, catalytic domain IPR042214 Pseudouridine synthase, TruD, catalytic domain 21 340 1.4E-106
SUPERFAMILY SSF55120 Pseudouridine synthase IPR020103 Pseudouridine synthase, catalytic domain superfamily 13 342 1.58E-94
Pfam PF01142 tRNA pseudouridine synthase D (TruD) IPR001656 Pseudouridine synthase, TruD 23 172 2.6E-38
PANTHER PTHR47811 TRNA PSEUDOURIDINE SYNTHASE D - - 7 350 0.0
Gene3D G3DSA:3.30.2340.10 TruD, insertion domain IPR043165 Pseudouridine synthase, TruD, insertion domain superfamily 172 304 1.4E-106
Hamap MF_01082 tRNA pseudouridine synthase D [truD]. IPR001656 Pseudouridine synthase, TruD 9 345 27.053818

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.