Pseudomonas aeruginosa UCBPP-PA14, PA14_17480 (rpoS)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:2000145 regulation of cell motility
ISS
Inferred from Sequence or Structural Similarity
Term mapped from: PseudoCAP:PA3622
 ECO:0000249
sequence similarity evidence used in automatic assertion		 10383954
Biological Process GO:1900034 regulation of cellular response to heat
ISS
Inferred from Sequence or Structural Similarity
Term mapped from: PseudoCAP:PA3622
 ECO:0000249
sequence similarity evidence used in automatic assertion		 10383954
Biological Process GO:0006355 regulation of transcription, DNA-templated
ISS
Inferred from Sequence or Structural Similarity
Term mapped from: PseudoCAP:PA3622
 ECO:0000249
sequence similarity evidence used in automatic assertion		 10383954
Biological Process GO:1901000 regulation of response to salt stress
ISS
Inferred from Sequence or Structural Similarity
Term mapped from: PseudoCAP:PA3622
 ECO:0000249
sequence similarity evidence used in automatic assertion		 10383954
Biological Process GO:1900407 regulation of cellular response to oxidative stress
ISS
Inferred from Sequence or Structural Similarity
Term mapped from: PseudoCAP:PA3622
 ECO:0000249
sequence similarity evidence used in automatic assertion		 10383954
Biological Process GO:0050921 positive regulation of chemotaxis
ISS
Inferred from Sequence or Structural Similarity
Term mapped from: PseudoCAP:PA3622
 ECO:0000249
sequence similarity evidence used in automatic assertion		 15687221
Biological Process GO:1900233 positive regulation of single-species biofilm formation on inanimate substrate
ISS
Inferred from Sequence or Structural Similarity
Term mapped from: PseudoCAP:PA3622
 ECO:0000249
sequence similarity evidence used in automatic assertion		 20735777
Biological Process GO:1900377 negative regulation of secondary metabolite biosynthetic process
ISS
Inferred from Sequence or Structural Similarity
Term mapped from: PseudoCAP:PA3622
 ECO:0000249
sequence similarity evidence used in automatic assertion		 10383954
Molecular Function GO:0016987 sigma factor activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00140
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006355 regulation of transcription, DNA-templated
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00140
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003677 DNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00140
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003700 DNA-binding transcription factor activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00140
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006352 DNA-templated transcription, initiation
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00140
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Transcriptional regulators Other UCBPP-PA14 genes in this class

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
PRINTS PR00046 Major sigma-70 factor signature IPR000943 RNA polymerase sigma-70 147 155 5.9E-28
Pfam PF04542 Sigma-70 region 2 IPR007627 RNA polymerase sigma-70 region 2 99 168 9.4E-22
NCBIfam TIGR02394 JCVI: RNA polymerase sigma factor RpoS IPR012761 RNA polymerase sigma factor RpoS 54 333 0.0
SUPERFAMILY SSF88946 Sigma2 domain of RNA polymerase sigma factors IPR013325 RNA polymerase sigma factor, region 2 61 169 2.88E-45
FunFam G3DSA:1.10.10.10:FF:000046 RNA polymerase sigma factor RpoS - - 172 248 7.0E-45
Gene3D G3DSA:1.10.10.10 - IPR036388 Winged helix-like DNA-binding domain superfamily 249 324 2.6E-22
PRINTS PR00046 Major sigma-70 factor signature IPR000943 RNA polymerase sigma-70 307 318 5.9E-28
Gene3D G3DSA:1.10.601.10 RNA Polymerase Primary Sigma Factor - - 26 168 3.6E-47
Gene3D G3DSA:1.10.10.10 - IPR036388 Winged helix-like DNA-binding domain superfamily 172 247 3.7E-15
Hamap MF_00959 RNA polymerase sigma factor RpoS [rpoS]. IPR012761 RNA polymerase sigma factor RpoS 4 333 40.747299
PRINTS PR00046 Major sigma-70 factor signature IPR000943 RNA polymerase sigma-70 271 283 5.9E-28
CDD cd06171 Sigma70_r4 - - 262 319 4.7209E-11
MobiDBLite mobidb-lite consensus disorder prediction - - 32 50 -
PRINTS PR00046 Major sigma-70 factor signature IPR000943 RNA polymerase sigma-70 123 136 5.9E-28
MobiDBLite mobidb-lite consensus disorder prediction - - 21 50 -
SUPERFAMILY SSF88659 Sigma3 and sigma4 domains of RNA polymerase sigma factors IPR013324 RNA polymerase sigma factor, region 3/4-like 230 327 2.62E-25
FunFam G3DSA:1.10.601.10:FF:000001 RNA polymerase sigma factor SigA - - 91 171 1.1E-46
Pfam PF04539 Sigma-70 region 3 IPR007624 RNA polymerase sigma-70 region 3 179 253 1.5E-20
NCBIfam TIGR02937 JCVI: sigma-70 family RNA polymerase sigma factor IPR014284 RNA polymerase sigma-70 like domain 96 322 1.1E-36
Pfam PF04545 Sigma-70, region 4 IPR007630 RNA polymerase sigma-70 region 4 267 320 1.1E-15
PANTHER PTHR30603 RNA POLYMERASE SIGMA FACTOR RPO - - 95 328 6.3E-85
SUPERFAMILY SSF88659 Sigma3 and sigma4 domains of RNA polymerase sigma factors IPR013324 RNA polymerase sigma factor, region 3/4-like 172 246 5.67E-14
FunFam G3DSA:1.10.10.10:FF:000044 RNA polymerase sigma factor RpoS - - 250 323 1.6E-38
PRINTS PR00046 Major sigma-70 factor signature IPR000943 RNA polymerase sigma-70 292 307 5.9E-28
Pfam PF00140 Sigma-70 factor, region 1.2 IPR009042 RNA polymerase sigma-70 region 1.2 61 94 2.7E-13

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.