Pseudomonas aeruginosa UCBPP-PA14, PA14_41570 (oprF)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Cellular Component GO:0019867 outer membrane
ISS
Inferred from Sequence or Structural Similarity
Term mapped from: PseudoCAP:PA1777
 ECO:0000249
sequence similarity evidence used in automatic assertion		 2836364
Molecular Function GO:0015288 porin activity
ISS
Inferred from Sequence or Structural Similarity
Term mapped from: PseudoCAP:PA1777
 ECO:0000249
sequence similarity evidence used in automatic assertion		 2836364
Biological Process GO:0044406 adhesion of symbiont to host
ISS
Inferred from Sequence or Structural Similarity
Term mapped from: PseudoCAP:PA1777
 ECO:0000249
sequence similarity evidence used in automatic assertion		 21189321
Molecular Function GO:0005509 calcium ion binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SSF103647
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Cellular Component GO:0016020 membrane
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PR01021
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Transport of small molecules Other UCBPP-PA14 genes in this class
Membrane proteins Other UCBPP-PA14 genes in this class

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
CDD cd07185 OmpA_C-like IPR006665 OmpA-like domain 239 345 1.09411E-48
PRINTS PR01021 OMPA domain signature IPR006664 Outer membrane protein, bacterial 274 289 7.4E-18
FunFam G3DSA:3.30.1330.60:FF:000005 Outer membrane porin F - - 229 347 1.4E-56
PANTHER PTHR30329 STATOR ELEMENT OF FLAGELLAR MOTOR COMPLEX - - 222 342 1.9E-33
PRINTS PR01021 OMPA domain signature IPR006664 Outer membrane protein, bacterial 289 305 7.4E-18
Pfam PF05736 OprF membrane domain IPR008722 Outer membrane porin F, N-terminal 1 188 2.4E-97
SUPERFAMILY SSF103088 OmpA-like IPR036737 OmpA-like domain superfamily 235 345 3.27E-39
SUPERFAMILY SSF103647 TSP type-3 repeat IPR028974 TSP type-3 repeat 198 232 4.84E-7
Pfam PF00691 OmpA family IPR006665 OmpA-like domain 244 339 7.8E-24
SUPERFAMILY SSF56925 OMPA-like IPR011250 Outer membrane protein/outer membrane enzyme PagP, beta-barrel 45 188 6.54E-17
Gene3D G3DSA:3.30.1330.60 - IPR036737 OmpA-like domain superfamily 229 350 2.0E-41
Gene3D G3DSA:2.40.160.20 - - - 14 184 2.7E-55
PRINTS PR01021 OMPA domain signature IPR006664 Outer membrane protein, bacterial 244 266 7.4E-18

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.