Pseudomonas aeruginosa UCBPP-PA14, PA14_45910

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0022857 transmembrane transporter activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR01730
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Cellular Component GO:0016020 membrane
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR01730
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0055085 transmembrane transport
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR01730
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Protein secretion/export apparatus Other UCBPP-PA14 genes in this class
Transport of small molecules Other UCBPP-PA14 genes in this class

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Gene3D G3DSA:2.40.50.100 - - - 70 214 5.4E-62
Coils Coil Coil - - 111 138 -
PANTHER PTHR30469 MULTIDRUG RESISTANCE PROTEIN MDTA - - 9 374 7.0E-92
Gene3D G3DSA:2.40.30.170 - - - 64 281 5.4E-62
Gene3D G3DSA:2.40.420.20 - - - 282 371 4.0E-15
Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain 70 291 1.4E-18
Gene3D G3DSA:1.10.287.470 Helix hairpin bin - - 105 178 5.4E-62
NCBIfam TIGR01730 JCVI: efflux RND transporter periplasmic adaptor subunit IPR006143 RND efflux pump, membrane fusion protein 46 370 5.4E-73
FunFam G3DSA:1.10.287.470:FF:000044 Probable RND efflux membrane fusion protein - - 105 178 1.1E-45
FunFam G3DSA:2.40.420.20:FF:000020 Probable RND efflux membrane fusion protein - - 282 371 9.0E-58
SUPERFAMILY SSF111369 HlyD-like secretion proteins - - 62 298 1.31E-52

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.