Pseudomonas aeruginosa UCBPP-PA14, PA14_45970
Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
Upstream Motifs
*Up to 500bp upstream
| Name | Start | Stop | Strand | Evidence | PMID | |
|---|---|---|---|---|---|---|
| Inverted repeat: CGTTGCGGCG-N94-CGCCGCAACG | 4089162 | 4089275 | + |
ECO:0000246
computational combinatorial evidence used in automatic assertion |
10827456 | Details |
| Inverted repeat: GCGCGGCACCTCGCC-N6-GGCGAGGTGCCGCGC | 4089343 | 4089378 | + |
ECO:0000246
computational combinatorial evidence used in automatic assertion |
10827456 | Details |
| Inverted repeat: GACCTGTGGG-N58-CCCACAGGTC | 4089692 | 4089769 | + |
ECO:0000246
computational combinatorial evidence used in automatic assertion |
10827456 | Details |
Motifs annotated in this feature
| Name | Start | Stop | Strand | Evidence | PMID | |
|---|---|---|---|---|---|---|
| Inverted repeat: GGCTGGCCCTG-N48-CAGGGCCAGCC | 4088397 | 4088466 | + |
ECO:0000246
computational combinatorial evidence used in automatic assertion |
10827456 | Details |
| Inverted repeat: CGTTGCGGCG-N94-CGCCGCAACG | 4089162 | 4089275 | + |
ECO:0000246
computational combinatorial evidence used in automatic assertion |
10827456 | Details |
Downstream motifs
*Up to 500bp downstream
| Name | Start | Stop | Strand | Evidence | PMID | |
|---|---|---|---|---|---|---|
| potential lux box upstream of lasR gene | 4086258 | 4086307 | - |
|
9190808 | Details |
| Vfr box upstream of lasR gene (CCS) | 4086308 | 4086347 | - |
|
9190808 | Details |
| lasR promoter P2 | 4086284 | 4086333 | - |
|
9190808 | Details |
| lasR promoter P1 | 4086254 | 4086303 | - |
|
9190808 | Details |
| Vfr protected region upstream of lasR gene | 4086098 | 4086347 | - |
|
17159200 | Details |
| Palindrome | 4086326 | 4086347 | + |
ECO:0000246
computational combinatorial evidence used in automatic assertion |
10827456 | Details |