Pseudomonas aeruginosa UCBPP-PA14, PA14_51630

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0003676 nucleic acid binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:G3DSA:3.30.420.10
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0015074 DNA integration
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00665
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Related to phage, transposon, or plasmid Other UCBPP-PA14 genes in this class

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Pfam PF00665 Integrase core domain IPR001584 Integrase, catalytic core 118 212 1.3E-18
Pfam PF13276 HTH-like domain IPR025948 HTH-like domain 41 93 2.1E-12
Gene3D G3DSA:3.30.420.10 - IPR036397 Ribonuclease H superfamily 114 266 6.2E-24
SUPERFAMILY SSF53098 Ribonuclease H-like IPR012337 Ribonuclease H-like superfamily 111 269 1.26E-35
NCBIfam NF033516 NCBIFAM: IS3 family transposase IPR048020 IS3 transposase 1 269 1.8E-85
PANTHER PTHR46889 TRANSPOSASE INSF FOR INSERTION SEQUENCE IS3B-RELATED - - 7 273 1.9E-69

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.