Pseudomonas aeruginosa UCBPP-PA14, PA14_51780 (ruvB)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0072715 cellular response to selenite ion
ISS
Inferred from Sequence or Structural Similarity
Term mapped from: PseudoCAP:PA0967
 ECO:0000249
sequence similarity evidence used in automatic assertion		 16105671
Biological Process GO:0006281 DNA repair
ISS
Inferred from Sequence or Structural Similarity
Term mapped from: PseudoCAP:PA0967
 ECO:0000249
sequence similarity evidence used in automatic assertion		 16105671
Biological Process GO:0006281 DNA repair
ISS
Inferred from Sequence or Structural Similarity
Term mapped from: PseudoCAP:PA0967
 ECO:0000249
sequence similarity evidence used in automatic assertion		 10913087
Biological Process GO:0071247 cellular response to chromate
ISS
Inferred from Sequence or Structural Similarity
Term mapped from: PseudoCAP:PA0967
 ECO:0000249
sequence similarity evidence used in automatic assertion		 16105671
Biological Process GO:0006310 DNA recombination
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF05491
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0005524 ATP binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PTHR42848
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003677 DNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF05491
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006281 DNA repair
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF05491
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0009378 four-way junction helicase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF05491
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0016887 ATPase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00382
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

DNA replication, recombination, modification and repair Other UCBPP-PA14 genes in this class

Pathways

Database Xref Pathway Version Evidence PMID
KEGG pau03440 Homologous recombination 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
FunFam G3DSA:1.10.10.10:FF:000086 Holliday junction ATP-dependent DNA helicase RuvB - - 261 337 2.8E-41
FunFam G3DSA:1.10.8.60:FF:000023 Holliday junction ATP-dependent DNA helicase RuvB - - 187 259 2.4E-35
Gene3D G3DSA:1.10.8.60 - - - 185 260 2.5E-33
CDD cd00009 AAA - - 42 179 1.73413E-12
Pfam PF17864 RuvB AAA lid domain IPR041445 RuvB, AAA lid domain 185 258 3.6E-33
Pfam PF05496 Holliday junction DNA helicase RuvB P-loop domain IPR008824 RuvB-like P-loop domain 24 182 4.1E-81
NCBIfam TIGR00635 JCVI: Holliday junction DNA helicase RuvB IPR004605 Holliday junction branch migration complex subunit RuvB 28 330 0.0
SUPERFAMILY SSF46785 Winged helix DNA-binding domain IPR036390 Winged helix DNA-binding domain superfamily 261 334 1.47E-25
SMART SM00382 AAA_5 IPR003593 AAA+ ATPase domain 55 182 7.4E-13
Gene3D G3DSA:1.10.10.10 - IPR036388 Winged helix-like DNA-binding domain superfamily 261 352 1.7E-37
PANTHER PTHR42848 - IPR004605 Holliday junction branch migration complex subunit RuvB 2 335 0.0
Pfam PF05491 RuvB C-terminal winged helix domain IPR008823 RuvB C-terminal winged helix domain 259 329 4.8E-25
Hamap MF_00016 Holliday junction branch migration complex subunit RuvB [ruvB]. IPR004605 Holliday junction branch migration complex subunit RuvB 1 352 182.798431
Gene3D G3DSA:3.40.50.300 - IPR027417 P-loop containing nucleoside triphosphate hydrolase 23 184 1.6E-43
SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases IPR027417 P-loop containing nucleoside triphosphate hydrolase 24 255 1.84E-51
FunFam G3DSA:3.40.50.300:FF:000073 Holliday junction ATP-dependent DNA helicase RuvB - - 23 184 1.7E-94

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.