Pseudomonas aeruginosa UCBPP-PA14, PA14_51840

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0003676 nucleic acid binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PR00050
ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Transcriptional regulators Other UCBPP-PA14 genes in this class

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
PRINTS PR00050 Cold shock protein signature IPR002059 Cold-shock protein, DNA-binding 140 155 1.9E-15
CDD cd04458 CSP_CDS IPR002059 Cold-shock protein, DNA-binding 139 199 2.60369E-31
Gene3D G3DSA:2.40.50.140 138 200 1.3E-25
Pfam PF00313 'Cold-shock' DNA-binding domain IPR002059 Cold-shock protein, DNA-binding 139 200 1.6E-25
ProSiteProfiles PS51857 Cold-shock (CSD) domain profile. 137 201 30.429
PRINTS PR00050 Cold shock protein signature IPR002059 Cold-shock protein, DNA-binding 160 169 1.9E-15
PRINTS PR00050 Cold shock protein signature IPR002059 Cold-shock protein, DNA-binding 175 193 1.9E-15
SUPERFAMILY SSF50249 IPR012340 Nucleic acid-binding, OB-fold 137 200 3.67E-22
MobiDBLite mobidb-lite consensus disorder prediction 112 136 -
SMART SM00357 IPR011129 Cold shock domain 139 202 6.5E-25
ProSitePatterns PS00352 Cold-shock (CSD) domain signature. IPR019844 Cold-shock (CSD) domain 151 169 -

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.