Pseudomonas aeruginosa UCBPP-PA14, PA14_53140

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0006355 regulation of transcription, DNA-templated
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00989
ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Motility & Attachment Other UCBPP-PA14 genes in this class

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain IPR000160 GGDEF domain 375 539 4.9E-44
ProSiteProfiles PS50883 EAL domain profile. IPR001633 EAL domain 553 811 56.7
SMART SM00052 IPR001633 EAL domain 552 802 2.6E-69
TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein IPR000014 PAS domain 256 374 1.1E-14
CDD cd01948 EAL IPR001633 EAL domain 558 802 2.96026E-86
CDD cd01949 GGDEF IPR000160 GGDEF domain 380 538 2.28156E-61
ProSiteProfiles PS50112 PAS repeat profile. IPR000014 PAS domain 248 321 11.681
CDD cd00130 PAS IPR000014 PAS domain 259 365 2.94056E-10
Pfam PF00563 EAL domain IPR001633 EAL domain 558 797 7.7E-63
Pfam PF00989 PAS fold IPR013767 PAS fold 256 365 7.2E-12
SMART SM00091 IPR000014 PAS domain 250 316 3.4E-7
SUPERFAMILY SSF55785 IPR035965 PAS domain superfamily 237 366 3.32E-18
SUPERFAMILY SSF141868 IPR035919 EAL domain superfamily 558 801 4.97E-73
Gene3D G3DSA:3.20.20.450 IPR035919 EAL domain superfamily 542 803 3.0E-83
MobiDBLite mobidb-lite consensus disorder prediction 1 21 -
Gene3D G3DSA:3.30.450.20 239 366 1.2E-20
ProSiteProfiles PS50887 GGDEF domain profile. IPR000160 GGDEF domain 409 542 34.389
Gene3D G3DSA:3.30.70.270 373 541 1.9E-57
SUPERFAMILY SSF55073 IPR029787 Nucleotide cyclase 384 542 2.35E-49
Pfam PF00990 Diguanylate cyclase, GGDEF domain IPR000160 GGDEF domain 379 536 2.2E-45
SMART SM00267 IPR000160 GGDEF domain 368 540 2.5E-64

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.