Pseudomonas aeruginosa UCBPP-PA14, PA14_55730

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0006355 regulation of transcription, DNA-templated
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PR00032
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0043565 sequence-specific DNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00342
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003700 DNA-binding transcription factor activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PR00032
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Transcriptional regulators Other UCBPP-PA14 genes in this class

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
SMART SM00342 aracneu4 IPR018060 DNA binding HTH domain, AraC-type 174 256 3.6E-23
CDD cd06124 cupin_NimR-like_N - - 19 113 6.33416E-38
SUPERFAMILY SSF46689 Homeodomain-like IPR009057 Homeobox-like domain superfamily 211 256 1.43E-9
Gene3D G3DSA:2.60.120.10 Jelly Rolls IPR014710 RmlC-like jelly roll fold 4 99 1.5E-7
Pfam PF12833 Helix-turn-helix domain IPR018060 DNA binding HTH domain, AraC-type 180 256 5.0E-23
PRINTS PR00032 AraC bacterial regulatory protein HTH signature IPR020449 Transcription regulator HTH, AraC- type 225 240 1.1E-6
Gene3D G3DSA:1.10.10.60 - - - 154 259 1.1E-24
Pfam PF02311 AraC-like ligand binding domain IPR003313 AraC-type arabinose-binding/dimerisation domain 21 99 6.8E-11
PRINTS PR00032 AraC bacterial regulatory protein HTH signature IPR020449 Transcription regulator HTH, AraC- type 240 256 1.1E-6
FunFam G3DSA:1.10.10.60:FF:000132 AraC family transcriptional regulator - - 155 259 1.9E-42
PANTHER PTHR11019 HTH-TYPE TRANSCRIPTIONAL REGULATOR NIMR - - 1 260 3.7E-86
SUPERFAMILY SSF51182 RmlC-like cupins IPR011051 RmlC-like cupin domain superfamily 16 183 7.41E-15

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.