Pseudomonas aeruginosa UCBPP-PA14, PA14_60600 (rtcR)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0005524 ATP binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00158
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006355 regulation of transcription, DNA-templated
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PIRSF037354
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0008134 transcription factor binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00158
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0016887 ATPase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00382
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003700 DNA-binding transcription factor activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PIRSF037354
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Transcriptional regulators Other UCBPP-PA14 genes in this class

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
CDD cd00009 AAA - - 203 356 4.41441E-19
Gene3D G3DSA:3.40.50.300 - IPR027417 P-loop containing nucleoside triphosphate hydrolase 175 364 2.9E-49
PIRSF PIRSF037354 RtcR IPR017183 Sigma54-dependent transcriptional activator, RtcR 1 531 0.0
Pfam PF06956 Regulator of RNA terminal phosphate cyclase IPR009715 Regulator of RNA terminal phosphate cyclase 2 188 2.7E-86
FunFam G3DSA:3.40.50.300:FF:001653 Transcriptional regulator RtcR - - 175 364 6.8E-102
SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases IPR027417 P-loop containing nucleoside triphosphate hydrolase 190 441 3.11E-50
PANTHER PTHR32071 TRANSCRIPTIONAL REGULATORY PROTEIN - - 157 524 1.1E-77
Pfam PF00158 Sigma-54 interaction domain IPR002078 RNA polymerase sigma factor 54 interaction domain 190 358 1.1E-49
NCBIfam NF038308 NCBIFAM: RNA repair transcriptional activator RtcR IPR017183 Sigma54-dependent transcriptional activator, RtcR 1 530 0.0
Gene3D G3DSA:1.10.8.60 - - - 366 446 1.6E-12
SMART SM00382 AAA_5 IPR003593 AAA+ ATPase domain 210 356 3.0E-11

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.