Pseudomonas aeruginosa UCBPP-PA14, PA14_63280

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0043565 sequence-specific DNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00342
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006355 regulation of transcription, DNA-templated
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00342
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003700 DNA-binding transcription factor activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00342
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Transcriptional regulators Other UCBPP-PA14 genes in this class

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Pfam PF12625 Arabinose-binding domain of AraC transcription regulator, N-term IPR032687 HTH-type transcriptional regulator AraC-type, N-terminal 22 199 3.3E-42
SUPERFAMILY SSF46689 Homeodomain-like IPR009057 Homeobox-like domain superfamily 278 328 8.51E-12
Gene3D G3DSA:1.10.10.60 - - - 222 331 3.9E-23
Pfam PF12833 Helix-turn-helix domain IPR018060 DNA binding HTH domain, AraC-type 249 327 7.4E-18
PANTHER PTHR47894 HTH-TYPE TRANSCRIPTIONAL REGULATOR GADX - - 1 332 5.8E-84
SMART SM00342 aracneu4 IPR018060 DNA binding HTH domain, AraC-type 243 325 6.4E-19

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.