Pseudomonas aeruginosa UCBPP-PA14, PA14_64820

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0006355 regulation of transcription, DNA-templated
ISM
Inferred from Sequence Model
Term mapped from: InterPro:cd07377
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003700 DNA-binding transcription factor activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:cd07377
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Transcriptional regulators Other UCBPP-PA14 genes in this class

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
SMART SM00895 FCD_2 IPR011711 GntR, C-terminal 75 212 3.0E-22
CDD cd07377 WHTH_GntR IPR000524 Transcription regulator HTH, GntR 6 66 1.64049E-13
Pfam PF07729 FCD domain IPR011711 GntR, C-terminal 77 210 2.7E-16
Gene3D G3DSA:1.20.120.530 - IPR008920 Transcription regulator FadR/GntR, C-terminal 68 217 1.6E-25
SMART SM00345 gntr3 IPR000524 Transcription regulator HTH, GntR 8 65 3.3E-9
SUPERFAMILY SSF48008 GntR ligand-binding domain-like IPR008920 Transcription regulator FadR/GntR, C-terminal 71 214 1.7E-17
SUPERFAMILY SSF46785 Winged helix DNA-binding domain IPR036390 Winged helix DNA-binding domain superfamily 6 94 5.16E-14
Pfam PF00392 Bacterial regulatory proteins, gntR family IPR000524 Transcription regulator HTH, GntR 6 63 6.7E-12
PANTHER PTHR43537 TRANSCRIPTIONAL REGULATOR, GNTR FAMILY - - 6 215 5.0E-35
Gene3D G3DSA:1.10.10.10 - IPR036388 Winged helix-like DNA-binding domain superfamily 4 66 2.2E-15

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.