Pseudomonas aeruginosa UCBPP-PA14, PA14_65200 (rnr)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0003676 nucleic acid binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00357
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0016070 RNA metabolic process
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR00358
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0004518 nuclease activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:TIGR02063
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0004540 ribonuclease activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00773
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003723 RNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF00773
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Transcription, RNA processing and degradation Other UCBPP-PA14 genes in this class

Pathways

Database Xref Pathway Version Evidence PMID
KEGG pau03018 RNA degradation 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
SUPERFAMILY SSF50249 Nucleic acid-binding proteins IPR012340 Nucleic acid-binding, OB-fold 142 239 6.43E-18
Gene3D G3DSA:2.40.50.140 - IPR012340 Nucleic acid-binding, OB-fold 78 152 2.0E-18
SMART SM00955 RNB_2 IPR001900 Ribonuclease II/R 264 598 0.0
SMART SM00357 csp_8 IPR011129 Cold shock domain 90 149 5.1E-12
Pfam PF00575 S1 RNA binding domain IPR003029 S1 domain 659 740 6.2E-11
Pfam PF08461 Ribonuclease R winged-helix domain IPR013668 Ribonuclease R winged-helix domain 27 81 5.0E-8
Pfam PF17876 Cold shock domain IPR040476 RNase II/RNase R, cold shock domain 169 242 9.5E-23
Pfam PF08206 Ribonuclease B OB domain IPR013223 Ribonuclease B, N-terminal OB domain 91 148 5.5E-22
Hamap MF_01895 Ribonuclease R [rnr]. IPR011805 Ribonuclease R 42 742 57.126091
CDD cd04471 S1_RNase_R - - 660 742 2.57169E-43
FunFam G3DSA:2.40.50.140:FF:000362 Ribonuclease R - - 662 768 4.8E-53
PANTHER PTHR23355 RIBONUCLEASE - - 142 752 0.0
SUPERFAMILY SSF50249 Nucleic acid-binding proteins IPR012340 Nucleic acid-binding, OB-fold 661 741 2.46E-20
FunFam G3DSA:2.40.50.140:FF:000213 Ribonuclease R - - 72 150 3.7E-29
Gene3D G3DSA:2.40.50.140 - IPR012340 Nucleic acid-binding, OB-fold 662 771 1.0E-20
MobiDBLite mobidb-lite consensus disorder prediction - - 750 781 -
Coils Coil Coil - - 626 646 -
Pfam PF00773 RNB domain IPR001900 Ribonuclease II/R 264 597 4.7E-105
SUPERFAMILY SSF50249 Nucleic acid-binding proteins IPR012340 Nucleic acid-binding, OB-fold 224 658 0.0
SMART SM00316 S1_6 IPR022967 RNA-binding domain, S1 659 742 3.9E-11
MobiDBLite mobidb-lite consensus disorder prediction - - 840 907 -
NCBIfam TIGR02063 JCVI: ribonuclease R IPR011805 Ribonuclease R 23 742 0.0
SUPERFAMILY SSF50249 Nucleic acid-binding proteins IPR012340 Nucleic acid-binding, OB-fold 71 151 1.52E-17
NCBIfam TIGR00358 JCVI: VacB/RNase II family 3'-5' exoribonuclease IPR004476 Ribonuclease II/ribonuclease R 79 741 0.0

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.