Pseudomonas aeruginosa UCBPP-PA14, PA14_65310 (hfq)

Gene Ontology

Ontology	Accession	Term	GO Evidence	Evidence Ontology (ECO) Code	Reference	Comments
Molecular Function	GO:0003723	RNA binding	ISM Inferred from Sequence Model Term mapped from: InterPro:TIGR02383	ECO:0000259 match to InterPro signature evidence used in automatic assertion
Biological Process	GO:0006355	regulation of transcription, DNA-templated	ISM Inferred from Sequence Model Term mapped from: InterPro:TIGR02383	ECO:0000259 match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Related to phage, transposon, or plasmid Other UCBPP-PA14 genes in this class Transcription, RNA processing and degradation Other UCBPP-PA14 genes in this class

Pathways

Database	Xref	Pathway	Version	Evidence	PMID
KEGG	pau02024	Quorum sensing	81.0+/01-23, Jan 17	ECO:0000249 sequence similarity evidence used in automatic assertion
KEGG	pau03018	RNA degradation	81.0+/01-23, Jan 17	ECO:0000249 sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis	Accession	Description	Interpro Accession	Interpro Description	Amino Acid Start	Amino Acid Stop	E-value
Gene3D	G3DSA:2.30.30.100	-	-	-	1	82	1.9E-38
FunFam	G3DSA:2.30.30.100:FF:000001	RNA-binding protein Hfq	-	-	1	75	4.2E-46
NCBIfam	TIGR02383	JCVI: RNA chaperone Hfq	IPR005001	RNA-binding protein Hfq	6	64	1.4E-29
PANTHER	PTHR34772	RNA-BINDING PROTEIN HFQ	IPR005001	RNA-binding protein Hfq	1	76	9.1E-35
SUPERFAMILY	SSF50182	Sm-like ribonucleoproteins	IPR010920	LSM domain superfamily	7	69	2.31E-24
Hamap	MF_00436	RNA-binding protein Hfq [hfq].	IPR005001	RNA-binding protein Hfq	1	64	27.383587
CDD	cd01716	Hfq	IPR005001	RNA-binding protein Hfq	6	64	5.93427E-29
Pfam	PF17209	Hfq protein	IPR005001	RNA-binding protein Hfq	7	68	2.2E-31

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.