Pseudomonas aeruginosa UCBPP-PA14, PA14_65370 (amiB)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0008745 N-acetylmuramoyl-L-alanine amidase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF01520
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0009253 peptidoglycan catabolic process
ISM
Inferred from Sequence Model
Term mapped from: InterPro:PF01520
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Cell wall / LPS / capsule Other UCBPP-PA14 genes in this class

Pathways

Database Xref Pathway Version Evidence PMID
KEGG pau01503 Cationic antimicrobial peptide (CAMP) resistance 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Coils Coil Coil - - 208 228 -
CDD cd00118 LysM IPR018392 LysM domain 424 467 4.48305E-10
Gene3D G3DSA:3.10.350.10 LysM domain IPR036779 LysM domain superfamily 418 473 1.7E-13
SMART SM00257 LysM_2 IPR018392 LysM domain 425 468 4.5E-11
SUPERFAMILY SSF53187 Zn-dependent exopeptidases - - 177 401 1.26E-54
CDD cd02696 MurNAc-LAA IPR002508 N-acetylmuramoyl-L-alanine amidase, catalytic domain 178 396 1.78432E-67
Pfam PF01520 N-acetylmuramoyl-L-alanine amidase IPR002508 N-acetylmuramoyl-L-alanine amidase, catalytic domain 179 397 2.6E-45
Pfam PF01476 LysM domain IPR018392 LysM domain 426 468 8.5E-11
MobiDBLite mobidb-lite consensus disorder prediction - - 146 163 -
SUPERFAMILY SSF54106 LysM domain IPR036779 LysM domain superfamily 425 468 6.28E-10
Pfam PF11741 AMIN domain IPR021731 AMIN domain 34 133 9.6E-22
Gene3D G3DSA:3.40.630.40 - - - 169 403 3.5E-69
Gene3D G3DSA:2.60.40.3500 - - - 22 136 4.0E-31
SMART SM00646 ami_3 IPR002508 N-acetylmuramoyl-L-alanine amidase, catalytic domain 239 397 1.8E-71
PANTHER PTHR30404 N-ACETYLMURAMOYL-L-ALANINE AMIDASE - - 7 402 1.0E-96
FunFam G3DSA:3.40.630.40:FF:000001 N-acetylmuramoyl-L-alanine amidase - - 168 404 1.4E-106
MobiDBLite mobidb-lite consensus disorder prediction - - 146 169 -

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.