Pseudomonas aeruginosa UCBPP-PA14, PA14_70450 (rpoZ)

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
View in JBrowse

Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Molecular Function GO:0003899 DNA-directed 5'-3' RNA polymerase activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SSF63562
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0006351 transcription, DNA-templated
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SSF63562
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003677 DNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SSF63562
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Transcription, RNA processing and degradation Other UCBPP-PA14 genes in this class

Pathways

Database Xref Pathway Version Evidence PMID
KEGG pau01100 Metabolic pathways 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG pau03020 RNA polymerase 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG pau00240 Pyrimidine metabolism 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion
KEGG pau00230 Purine metabolism 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Gene3D G3DSA:3.90.940.10 - IPR036161 RPB6/omega subunit-like superfamily 2 86 1.2E-27
PANTHER PTHR34476 DNA-DIRECTED RNA POLYMERASE SUBUNIT OMEGA IPR003716 DNA-directed RNA polymerase, omega subunit 1 87 5.3E-25
SMART SM01409 RNA_pol_Rpb6_2 IPR006110 RNA polymerase, subunit omega/Rpo6/RPB6 8 61 4.8E-17
Pfam PF01192 RNA polymerase Rpb6 IPR006110 RNA polymerase, subunit omega/Rpo6/RPB6 8 59 3.0E-19
NCBIfam TIGR00690 JCVI: DNA-directed RNA polymerase subunit omega IPR003716 DNA-directed RNA polymerase, omega subunit 1 59 2.8E-22
Hamap MF_00366 DNA-directed RNA polymerase subunit omega [rpoZ]. IPR003716 DNA-directed RNA polymerase, omega subunit 1 62 17.791557
SUPERFAMILY SSF63562 RPB6/omega subunit-like IPR036161 RPB6/omega subunit-like superfamily 1 77 2.79E-25

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.