Pseudomonas aeruginosa UCBPP-PA14, PA14_71070

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Biological Process GO:0006355 regulation of transcription, DNA-templated
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00342
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0043565 sequence-specific DNA binding
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00342
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Molecular Function GO:0003700 DNA-binding transcription factor activity
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00342
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Transcriptional regulators Other UCBPP-PA14 genes in this class

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Pfam PF01965 DJ-1/PfpI family IPR002818 DJ-1/PfpI 20 183 2.8E-17
SMART SM00342 aracneu4 IPR018060 DNA binding HTH domain, AraC-type 240 323 9.5E-29
PANTHER PTHR43130 ARAC-FAMILY TRANSCRIPTIONAL REGULATOR - - 13 263 5.8E-49
CDD cd03136 GATase1_AraC_ArgR_like - - 18 202 5.86732E-97
FunFam G3DSA:1.10.10.60:FF:000090 Transcriptional regulator ArgR, AraC family - - 220 325 2.2E-58
SUPERFAMILY SSF52317 Class I glutamine amidotransferase-like IPR029062 Class I glutamine amidotransferase-like 15 205 4.07E-48
Gene3D G3DSA:3.40.50.880 - IPR029062 Class I glutamine amidotransferase-like 12 213 5.1E-58
SUPERFAMILY SSF46689 Homeodomain-like IPR009057 Homeobox-like domain superfamily 224 274 2.15E-9
Pfam PF12833 Helix-turn-helix domain IPR018060 DNA binding HTH domain, AraC-type 246 324 1.2E-22
FunFam G3DSA:3.40.50.880:FF:000061 AraC family transcriptional regulator - - 12 213 0.0
Gene3D G3DSA:1.10.10.60 - - - 220 326 4.7E-30
SUPERFAMILY SSF46689 Homeodomain-like IPR009057 Homeobox-like domain superfamily 276 325 8.06E-12

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.