Pseudomonas aeruginosa PA7, PSPA7_4249

Cytoplasmic
Cytoplasmic Membrane
Periplasmic
Outer Membrane
Extracellular
Unknown
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Gene Ontology

Ontology Accession Term GO Evidence Evidence Ontology (ECO) Code Reference Comments
Cellular Component GO:0016020 membrane
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00304
 ECO:0000259
match to InterPro signature evidence used in automatic assertion
Biological Process GO:0007165 signal transduction
ISM
Inferred from Sequence Model
Term mapped from: InterPro:SM00304
 ECO:0000259
match to InterPro signature evidence used in automatic assertion

Functional Classifications Manually Assigned by PseudoCAP

Pathways

Database Xref Pathway Version Evidence PMID
KEGG pap02025 Biofilm formation - Pseudomonas aeruginosa 81.0+/01-23, Jan 17 ECO:0000249
sequence similarity evidence used in automatic assertion

Functional Predictions from Interpro

Analysis Accession Description Interpro Accession Interpro Description Amino Acid Start Amino Acid Stop E-value
Gene3D G3DSA:6.10.340.10 - - - 149 239 1.4E-7
Pfam PF17152 Periplasmic sensor domain IPR033417 Periplasmic sensor domain CHASE8 44 144 5.1E-33
CDD cd06225 HAMP - - 185 230 1.44312E-4
MobiDBLite mobidb-lite consensus disorder prediction - - 410 434 -
SUPERFAMILY SSF55073 Nucleotide cyclase IPR029787 Nucleotide cyclase 253 408 2.75E-45
NCBIfam TIGR00254 JCVI: diguanylate cyclase (GGDEF) domain IPR000160 GGDEF domain 244 407 1.6E-43
Pfam PF00672 HAMP domain IPR003660 HAMP domain 180 231 2.6E-8
PANTHER PTHR46663 DIGUANYLATE CYCLASE DGCT-RELATED - - 115 411 1.4E-74
Gene3D G3DSA:3.30.70.270 - IPR043128 Reverse transcriptase/Diguanylate cyclase domain 253 412 1.5E-54
SMART SM00304 HAMP_11 IPR003660 HAMP domain 182 235 3.0E-7
Pfam PF00990 Diguanylate cyclase, GGDEF domain IPR000160 GGDEF domain 248 404 9.2E-47
SMART SM00267 duf1_3 IPR000160 GGDEF domain 237 410 1.6E-57
CDD cd01949 GGDEF IPR000160 GGDEF domain 249 405 1.04782E-59
FunFam G3DSA:3.30.70.270:FF:000001 Diguanylate cyclase domain protein - - 243 410 2.6E-41
Coils Coil Coil - - 216 243 -

Search for additional functional domains at the NCBI CDD database website. Go to this protein's amino acid sequence and follow the link.